CB322136

Overview
NameCB322136
Unique NameCB322136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9226 contig Csv1_Contig9226:48..352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.827e-34
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS GSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDSVCVVTQKKVPDKLLD TSV+HLFPITK
Sbjct:    1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITK 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.822e-34
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS G+G GYDRHITIFSPEGRL+QVEYAFKAVK+AGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK
Sbjct:    1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.403e-33
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS GSGGGY+RHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDS+CVVT KKVPDKLLD+TSVTHLFPITK
Sbjct:    1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITK 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 4.082e-33
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS GSG GYDRHITIFSPEGRLFQVEYAFKAVK AG+TSIGVRGKDSVCVVTQKKVPDKLLD +SVTHLFPITK
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITK 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.331e-33
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS GSG GYDRHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDSVCVVTQKKVPDKLLD +SV+HLFP+TK
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTK 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.092e-25
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS GS  G+DRHITIFSPEGRL+QVEYAFKA+   G+TS+ VRGKD   +VTQKKVPDKLLD ++VTHLF IT+
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITE 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.092e-25
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS GS  G+DRHITIFSPEGRL+QVEYAFKA+   G+TS+ VRGKD   +VTQKKVPDKLLD ++VTHLF IT+
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITE 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.092e-25
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS GS  G+DRHITIFSPEGRL+QVEYAFKA+   G+TS+ VRGKD   +VTQKKVPDKLLD ++VTHLF IT+
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITE 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.092e-25
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   84 MSIGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            MS GS  G+DRHITIFSPEGRL+QVEYAFKA+   G+TS+ VRGKD   +VTQKKVPDKLLD ++VTHLF IT+
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITE 74          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.242e-22
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 305
            G+DR IT+FSPEGRL+QVEYAFKA   AG+TS+GV GK+  CV++QKKVPDKL+D ++V H+FPITK
Sbjct:    6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITK 72          
The following BLAST results are available for this feature:
BLAST of CB322136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PSA6_TOBAC2.827e-3494.59Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_ORYSJ4.822e-3493.24Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6_SOYBN1.403e-3391.89Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6A_ARATH4.082e-3391.89Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6B_ARATH5.331e-3390.54Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6_RAT4.092e-2571.62Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_MOUSE4.092e-2571.62Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_HUMAN4.092e-2571.62Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN4.092e-2571.62Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_SCHPO3.242e-2268.66Probable proteasome subunit alpha type-6 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionEST0250 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB169 similar to proteasome subunit alpha type 6 (acc# CAB39975), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322136 ID=CB322136; Name=CB322136; organism=Citrus sinensis; type=EST; length=305bp
ACGAAGTGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTG
AAAGAGAGGAATCACTGTAGCGTATAATCAACAATGAGTATAGGAAGTGG
AGGAGGATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCT
TTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCT
ATTGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGT
CCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCA
CAAAG
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