CB322142

Overview
NameCB322142
Unique NameCB322142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4570 contig Csv1_Contig4570:110..569. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CITSI (ATP synthase subunit beta, chloroplastic OS=Citrus sinensis GN=atpB PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 1.728e-76
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CUCSA (ATP synthase subunit beta, chloroplastic OS=Cucumis sativus GN=atpB PE=3 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 5.026e-76
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDE TAKATNLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEMESNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_SOYBN (ATP synthase subunit beta, chloroplastic OS=Glycine max GN=atpB PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.495e-75
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYV LAETIRGFKLILSGELDGLPEQAFYLVGNIDE TAKATNLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVSLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEMESNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_GOSHI (ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum GN=atpB PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.495e-75
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDE TAKATNLEMES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEMESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_EUCGG (ATP synthase subunit beta, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpB PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.495e-75
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDE TAKATNLEMES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEMESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_PANGI (ATP synthase subunit beta, chloroplastic OS=Panax ginseng GN=atpB PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 7.258e-75
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGF+LILSGELDGLPEQAFYLVGNIDE TAKA NLEMESNLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAMNLEMESNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_GOSBA (ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense GN=atpB PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 9.480e-75
Identity = 143/147 (97.28%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRY ELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDE TAKATNLEMES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYNELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEMESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_CARPA (ATP synthase subunit beta, chloroplastic OS=Carica papaya GN=atpB PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.238e-74
Identity = 143/147 (97.28%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDE TAKAT LEMES LKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATQLEMESKLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_POPTR (ATP synthase subunit beta, chloroplastic OS=Populus trichocarpa GN=atpB PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.617e-74
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQP+IVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELD LPEQAFYLVGNIDE TAKATNLEME+NLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKATNLEMENNLKK 498
[Close]
BLAST of CB322142 vs. ExPASy Swiss-Prot
Match: ATPB_POPTM (ATP synthase subunit beta, chloroplastic OS=Populus tremuloides GN=atpB PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.617e-74
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 2 
Query:    2 LSRGLVAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEVTAKATNLEMESNLKK 442
            LSRGL AKGIYPAVDPLDSTSTMLQP+IVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELD LPEQAFYLVGNIDE TAKATNLEME+NLKK
Sbjct:  352 LSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKATNLEMENNLKK 498
The following BLAST results are available for this feature:
BLAST of CB322142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CITSI1.728e-7699.32ATP synthase subunit beta, chloroplastic OS=Citrus... [more]
ATPB_CUCSA5.026e-7698.64ATP synthase subunit beta, chloroplastic OS=Cucumi... [more]
ATPB_SOYBN2.495e-7597.96ATP synthase subunit beta, chloroplastic OS=Glycin... [more]
ATPB_GOSHI2.495e-7597.96ATP synthase subunit beta, chloroplastic OS=Gossyp... [more]
ATPB_EUCGG2.495e-7597.96ATP synthase subunit beta, chloroplastic OS=Eucaly... [more]
ATPB_PANGI7.258e-7597.28ATP synthase subunit beta, chloroplastic OS=Panax ... [more]
ATPB_GOSBA9.480e-7597.28ATP synthase subunit beta, chloroplastic OS=Gossyp... [more]
ATPB_CARPA1.238e-7497.28ATP synthase subunit beta, chloroplastic OS=Carica... [more]
ATPB_POPTR1.617e-7496.60ATP synthase subunit beta, chloroplastic OS=Populu... [more]
ATPB_POPTM1.617e-7496.60ATP synthase subunit beta, chloroplastic OS=Populu... [more]

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Properties
Property NameValue
Genbank descriptionEST0256 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB175 similar to ATP synthase, beta subunit (acc# AAM23011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322142 ID=CB322142; Name=CB322142; organism=Citrus sinensis; type=EST; length=460bp
ACTATCAAGAGGATTAGTTGCTAAAGGTATCTATCCAGCAGTTGATCCTT
TAGACTCAACGTCAACTATGCTGCAACCTCGGATCGTTGGCGAGGAACAT
TATGAAACGGCGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACT
TCAGGACATTATAGCTATCCTTGGGTTGGACGAACTGTCCGAAGAGGATC
GTTTAACTGTAGCAAGGGCGCGAAAAATTGAGCGTTTCTTATCACAACCC
TTTTTCGTAGCCGAAGTATTTACCGGTTCCCCGGGGAAATATGTTGGTCT
AGCCGAAACTATTAGAGGGTTTAAATTGATCCTGTCCGGAGAATTAGATG
GTCTTCCTGAGCAGGCCTTTTATTTGGTAGGTAACATAGATGAAGTTACT
GCGAAGGCTACAAACTTAGAAATGGAGAGTAATTTGAAGAAATGACCTTA
AATCTTTGTG
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