CB322146

Overview
NameCB322146
Unique NameCB322146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1151 contig Csv1_Contig1151:1..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.092e-62
Identity = 126/158 (79.75%), Postives = 138/158 (87.34%), Query Frame = 2
Query:  140 MAMAALRREGRRFAT-PLISPRPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            MAMAALRREGRR A  P  SP P+ A+RS  +S  EE    GVRSISTQ+VRNRMKSVKNIQKITKAMKMV ASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA L
Sbjct:    1 MAMAALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQL 158          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.828e-59
Identity = 117/156 (75.00%), Postives = 138/156 (88.46%), Query Frame = 2
Query:  140 MAMAALRREGRRFATPLISPRPIAAIRSPFLSE-EDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            MAMA  RREGRR   P I+ RPIAAIRSP  S+ E+  LGVRSISTQ+VRNRMKSVKNIQKITKAMKMV ASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+
Sbjct:    1 MAMAVFRREGRRLL-PSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIM 155          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.913e-13
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            S + +RNR+ SVK+ QKIT AMKMV ASKLR  Q +AE  R        +L                 T T   + +++V ++SD+GLCGG NST V+ ++   K  +G  +  K + +G K + +L
Sbjct:    3 SLKDIRNRIGSVKSTQKITSAMKMVAASKLRRAQEQAEAGRPFADRMARMLASLAANVSGATGGPRLMTGTGSDQVHLLVVVTSDRGLCGGFNSTIVREARRTIKRLTGEGRTVKLLCVGRKGRDLL 129          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  257 VRSIST-QIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            VR+++T + +  R+KS+KNIQKITK+MKMV A+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++IL
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSIL 141          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_MOUSE (ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  257 VRSIST-QIVRNRMKSVKNIQKITKAMKMVTASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            VR+++T + +  R+KS+KNIQKITK+MKMV A+K       L+  +V    S  L++       +    D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K IL
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKADIKAPE----DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGIL 141          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_EHRCR (ATP synthase gamma chain OS=Ehrlichia chaffeensis (strain Arkansas) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  290 RMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTVD-------AKKN--VIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA 592
            R+KSVK+IQK TK M+M++A+KL  +Q K EN++      ++++   P+         AKK   ++V +SSD+GLCG  N+  VK +KS  +     +KE K +  G+KA
Sbjct:   10 RIKSVKSIQKTTKVMQMISAAKLHRVQQKLENAKKHLLELSSIVDYVPSDGVHNCASIAKKERVLLVVMSSDRGLCGNFNNLIVKFTKSYVEKLESSNKEVKLIFFGKKA 119          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = 2
Query:  269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 595
            S + ++NR++SVK+ +KITKAM+MV A+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +
Sbjct:    3 SLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGR 126          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 2
Query:  281 VRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            +  R+KS+KNIQKITK+MKMV A+K    + + + +R       AL          D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K+IL
Sbjct:    6 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSIL 116          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA------------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKA 598
            S + +++R+ SVK+ QKITKA +MV A+KLR  Q  AE +R    P+   L D     A                  +K+++V +++DKGLCGG+NS  VK +K+  K      K+ ++ ++G+K +A
Sbjct:    3 SLKELKDRIGSVKSTQKITKAKQMVAAAKLRRAQANAEAAR----PYAERLADVMASLAGKVSGDSAPRLLAGSGNDQKHLLVVVNTDKGLCGGLNSNIVKEAKAQAKKLIAAGKDVQFYLVGKKGRA 126          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_MACFA (ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  257 VRSIST-QIVRNRMKSVKNIQKITKAMKMVTASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            VR+++T + +  R+KS+KNIQKITK+MKMV A+K       L+  ++    S  L++     + +    D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKVPE----DKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGIL 141          
The following BLAST results are available for this feature:
BLAST of CB322146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ATPG3_IPOBA2.092e-6279.75ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH2.828e-5975.00ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_RHOCS8.913e-1336.22ATP synthase gamma chain OS=Rhodospirillum centenu... [more]
ATPG_BOVIN1.986e-1240.00ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_MOUSE4.424e-1238.71ATP synthase subunit gamma, mitochondrial OS=Mus m... [more]
ATPG_EHRCR4.424e-1238.18ATP synthase gamma chain OS=Ehrlichia chaffeensis ... [more]
ATPG_ROSDO7.546e-1232.26ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_RAT7.546e-1239.64ATP synthase subunit gamma, mitochondrial OS=Rattu... [more]
ATPG_ERYLH1.681e-1134.38ATP synthase gamma chain OS=Erythrobacter litorali... [more]
ATPG_MACFA2.195e-1136.29ATP synthase subunit gamma, mitochondrial OS=Macac... [more]

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Properties
Property NameValue
Genbank descriptionEST0262 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB181 similar to ATP synthase, gamma subunit (acc# P26360), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322146 ID=CB322146; Name=CB322146; organism=Citrus sinensis; type=EST; length=605bp
AAATCGGCAAAAGTGAAAATAGGTGAAATTTGTTCGACACCTGAGCTCGC
ACGACCCAAACAGAACATAAAGCTTTGGATCTGCAGCGTTCAAAATAAAA
TATTTCTAGGGTTTCCTACGACGACGGTTCATCAGAAAAATGGCGATGGC
TGCTCTGAGGCGCGAAGGCCGGCGATTCGCCACCCCTCTCATCTCCCCAC
GTCCAATCGCCGCAATCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCT
CTGGGAGTCCGGTCTATTTCAACTCAAATTGTTAGAAACCGGATGAAGAG
TGTTAAGAATATTCAGAAAATTACAAAGGCTATGAAGATGGTTACAGCCT
CAAAGTTAAGAGCAATTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGG
CAGCCATTCACTGCACTTCTTGGTGACACTCCCACTGTTGATGCTAAGAA
GAATGTTATTGTGACCATCTCTTCTGACAAAGGTCTATGTGGTGGAATTA
ACTCTACTGCAGTTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGT
CCCGACAAAGAAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAAT
ATTAG
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