CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9716 contig Csv1_Contig9716:388..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.345e-41
Identity = 90/125 (72.00%), Postives = 93/125 (74.40%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPV 377
            FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF RLKTK+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE               VLNGSSG PESL + L +
Sbjct:  798 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.718e-40
Identity = 89/126 (70.63%), Postives = 93/126 (73.81%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLA-DPLPV 377
            FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF+RLK K+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE              TVLNGSSG P   A +P+PV
Sbjct:  798 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.435e-38
Identity = 87/126 (69.05%), Postives = 91/126 (72.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPVV 380
            FRPEFLNRL EMIVFRQLTKLEVKEIADIMLKEVF RLK K+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE              TVLNG+SGAP   A P P++
Sbjct:  801 FRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.585e-37
Identity = 84/129 (65.12%), Postives = 91/129 (70.54%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAP----ESLADPLPV 377
            FRPEFLNRLDEMI+FRQLTKLEVKEIADI+L+E+F+RLK K++ELQ            GYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE              TVLNG SG P    E   D LPV
Sbjct:  745 FRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.363e-27
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNG 335
            FRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L             GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK               TVL G
Sbjct:  704 FRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.393e-27
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 275
            FRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L             GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK
Sbjct:  704 FRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.669e-26
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNRLDE+IVFRQLTK EV EIA+IMLKEVF R+  K I+L+            GYNP YGARPLRRA+MRLLED+++E+ LA +IKE
Sbjct:  701 FRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDTLSEEFLAEKIKE 792          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.847e-26
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+IVFRQLTK EV++IA IML+E+F+R+K + I LQ            GYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE
Sbjct:  734 FRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.976e-19
Identity = 44/90 (48.89%), Postives = 65/90 (72.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+DE+IVF  LTK ++ EI  +M+K++  RL+ K++ L+            GY+P YGARPLRRA+MRLLED++A++ L++ +
Sbjct:  735 FRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPL 824          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.727e-18
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNRLDE++VFR LTK ++++I +I L  +  RL  K I L+            GY+P +GARPLRR I R LE  +A+K+LA E+KE
Sbjct:  740 FRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPC_PEA5.345e-4172.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC7.718e-4070.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC9.435e-3869.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA3.585e-3765.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE3.363e-2757.66ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU4.393e-2765.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.669e-2665.22ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA2.847e-2663.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_ODOSI1.976e-1948.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_THET83.727e-1850.00Chaperone protein clpB OS=Thermus thermophilus (st... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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