CB322156

Overview
NameCB322156
Unique NameCB322156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322156 vs. ExPASy Swiss-Prot
Match: YBEG_SCHPO (Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe GN=SPBC1711.16 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = -2
Query:    6 IFGKGLGDLYYASNQMDPYXXXXXXXXXXXXXD-MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDVID 362
            +F    G  Y+ + + DPY             + M I P D++++ AR ED++SH+EVY+ E ++    NLYVHH  ++P FPLC+ WLD  +   D   GN++AVG+ +P IEIWDLD+ID
Sbjct:  105 MFSNIRGLAYHENGEKDPYITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYEPTE---ENLYVHHDFLLPTFPLCLEWLDYKVGTSDNAPGNYVAVGTFDPEIEIWDLDIID 223          
BLAST of CB322156 vs. ExPASy Swiss-Prot
Match: PWP1_HUMAN (Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = -2
Query:    6 LGDLYYASNQMDPYXXXXXXXXXXXXXDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVID 347
            LG   Y SN  DPY              + I P+D +IVC R E D  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D
Sbjct:  116 LGLTVYGSNDQDPYVTLKDTEQYEREDFL-IKPSDNLIVCGRAEQDQCNLEVHVYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVD 226          
BLAST of CB322156 vs. ExPASy Swiss-Prot
Match: PWP1_BOVIN (Periodic tryptophan protein 1 homolog OS=Bos taurus GN=PWP1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = -2
Query:    6 LGDLYYASNQMDPYXXXXXXXXXXXXXDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVID 347
            LG   Y SN  DPY              + I P+D +IVC R E D  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D
Sbjct:  115 LGLTVYGSNDQDPYVTLKDTEQYEREDFL-IKPSDNLIVCGRAEQDQCNLEVHVYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVD 225          
BLAST of CB322156 vs. ExPASy Swiss-Prot
Match: PWP1_MOUSE (Periodic tryptophan protein 1 homolog OS=Mus musculus GN=Pwp1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = -2
Query:    6 LGDLYYASNQMDPYXXXXXXXXXXXXXDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVID 347
            LG   Y SN  DPY              + I P D +IVC R E +  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D
Sbjct:  115 LGLTVYGSNDQDPYVTLKDTEQYEHEDFL-IKPTDNLIVCGRAEQEQCNLEVHVYNQEE---ESFYVHHDILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDIVD 225          
BLAST of CB322156 vs. ExPASy Swiss-Prot
Match: PWP1_YEAST (Periodic tryptophan protein 1 OS=Saccharomyces cerevisiae GN=PWP1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = -2
Query:    3 MTINPNDAVIVCARNEDDVSHLEVYI-------------LEESDGGDPN----------LYVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDVIDE 263
            + + P+D +++ AR EDDVS+L++Y+             +EE D  DP+          LYVHH +++PAFPLC+ WLD  +     E  N+ A+G+ +P IEIW+LD +D+
Sbjct:  138 LQVYPSDNLVLAARTEDDVSYLDIYVYDDGAGFHSSDIPVEEGDEADPDVARGLVRDPALYVHHDLMLPAFPLCVEWLDYKVGSNSEEAANYAAIGTFDPQIEIWNLDCVDK 249          
The following BLAST results are available for this feature:
BLAST of CB322156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YBEG_SCHPO6.319e-2140.98Uncharacterized WD repeat-containing protein C17D1... [more]
PWP1_HUMAN1.115e-1740.00Periodic tryptophan protein 1 homolog OS=Homo sapi... [more]
PWP1_BOVIN1.115e-1740.00Periodic tryptophan protein 1 homolog OS=Bos tauru... [more]
PWP1_MOUSE3.245e-1739.13Periodic tryptophan protein 1 homolog OS=Mus muscu... [more]
PWP1_YEAST9.443e-1737.50Periodic tryptophan protein 1 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionEST0273 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB193 similar to unknown Arabidopsis protein (acc# AAK92820), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322156 ID=CB322156; Name=CB322156; organism=Citrus sinensis; type=EST; length=672bp
ACCTCATCAATAACATCAAGGTCCCATATCTCGATGGCAGGTTCCATTGA
GCCAACAGCCATAAAATTCCCTTTTTCTCGGTCTTTTAGTGGGCAATCAA
GCCATGCCATGCAAAGGGGAAACGCTGGAATGATGATATGATGGTGAACA
TACAGATTCGGATCACCACCATCTGATTCCTCAAGTATATAGACCTCGAG
ATGACTGACATCATCCTCATTACGTGCACAAACAATGACTGCATCATTTG
GATTAATGGTCATGTCCTCAAGATCTTCAGAATCCTCATCATCTTTGTCC
TTTAGATAGGGATCCATTTGATTACTTGCATAGTAAAGGTCCCCAAGCCC
CTTGCCAAATATCTCAACACCATCATCTTCATCATCATAGTGGTCCATGT
CGAGTTCCTTCAAGCCATCAGTAATATCATCAAATTTAGTCCCCGAATTC
TTGCTTTTGGAAGTTTTTCCAAGTGCATTTGCGACAGCTACCGCTTGGGA
GGCGTCATCAGACTGCTTGGCCTCATCCTCAACCTCCATATCTTCATCAT
CATCCTCAATTTCATGTTCCAAAGCGCCGCTGTTTATAATCTCTTCAATT
TCTTCCTTCGATGGAGGCTCAGCCTCTTCAGGCACGGCCTTCGAAGCCCC
TTTGGGCACCCACGATACTGCT
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