CB322158

Overview
NameCB322158
Unique NameCB322158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length179
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322158 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:    3 PHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 119
            PHMLSV+NCFIRGSVVRYVQLP D VD  LL DA R+EA
Sbjct:   52 PHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
[Close]
BLAST of CB322158 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:    3 PHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 119
            PHMLSV+NCFIRGSVVRYVQLP D VD  LL DA R+EA
Sbjct:   52 PHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
The following BLAST results are available for this feature:
BLAST of CB322158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LSM2_MOUSE4.341e-1179.49U6 snRNA-associated Sm-like protein LSm2 OS=Mus mu... [more]
LSM2_HUMAN4.341e-1179.49U6 snRNA-associated Sm-like protein LSm2 OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionEST0275 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB195 similar to unknown Arabidopsis protein (acc# H86164), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322158 ID=CB322158; Name=CB322158; organism=Citrus sinensis; type=EST; length=179bp
ACCCTCACATGCTTTCAGTGAGGAACTGTTTCATCAGAGGATCAGTGGTT
AGATATGTTCAACTGCCTCCTGATGGTGTCGATGTCGACCTGCTTCATGA
TGCCACAAGAAGAGAAGCTCGGGGTGGCTGAAGTTAGTTGTTTAAATCTT
CAATGTACCTCGGCCGCGACCACGCTAAT
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