CB322166

Overview
NameCB322166
Unique NameCB322166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3956 contig Csv1_Contig3956:909..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.472e-46
Identity = 82/126 (65.08%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    2 LFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPF 379
            L++ICPYWKFAY +ANV I EA+  E  +HIIDFQIAQG+Q+MFL+  LAK PGG PL+R+TG+DDSQST+ARGGGL +VG+RL+  A SC VPFEF D  M+ C+V+R+HL ++PG AVVVNFP+
Sbjct:   52 LYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPY 177          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.260e-39
Identity = 78/124 (62.90%), Postives = 93/124 (75.00%), Query Frame = 2
Query:    2 LFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNF 373
            L++ CPY+KF YMSAN  I EAV+ E  IHIIDF I+QG QW+ LL ALA RPGG P VRITGIDDS S +ARGGGL++VG+RLS  A+ C VPFEF   A++  +VE  HL V PGEA+ VNF
Sbjct:  254 LYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNF 377          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.566e-38
Identity = 72/126 (57.14%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 LFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPF 379
            L+++CPY+KF YMSAN  I EA++ E+ +HIIDFQI QG+QW+ L+ A A RPGG P +RITGIDD  S +ARGGGL IVG RL++ A   NVPFEF   +++  EV+ ++L V+PGEA+ VNF F
Sbjct:  200 LYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLGVRPGEALAVNFAF 325          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.050e-36
Identity = 73/125 (58.40%), Postives = 91/125 (72.80%), Query Frame = 2
Query:    2 LFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFP 376
            L++ CPY+KF Y SAN  I EAV+NE  +HIIDFQI+QG QW+ L+ AL  RPGG P VRITGIDD +S+ AR GGL++VG+RL + A  C VPFEF   A+   EVE + L V+ GEA+ VNFP
Sbjct:  307 LYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCCTEVEIEKLGVRNGEALAVNFP 431          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.410e-35
Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 2
Query:    2 LFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNF 373
            L+ ICPY+KF YM+AN  I EA+  E+ IHIIDFQIAQGTQW+ L+ ALA RPGG P VRITGIDD  S +ARG GLDIVGK L   +    +P EF   ++ A +V ++ L ++PGEA+ VNF
Sbjct:  281 LYNICPYFKFGYMAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEFTPLSVYATQVTKEMLEIRPGEALSVNF 404          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.344e-28
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 2
Query:    2 LFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPF 379
            L ++CPY+KF YMSAN  I EA+++E  IHIIDFQI QG+QW+ L+ A A RPGG+P +RITG+ D       G  L  V KRL + A   +VPF F   +  +CEVE ++L V+ GEA+ VNF +
Sbjct:  130 LHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGD-------GSVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAY 248          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.974e-24
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 2
Query:    2 LFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPF 379
            LF++CP +KF +++AN  I EA++ E  +HIIDF I QG Q+M L+ ++A+ PG  P +R+TGIDD +S     GGL I+G RL + A    V F+F+        V    L  +PGE ++VNF F
Sbjct:  302 LFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCKPGETLIVNFAF 427          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.734e-21
Identity = 54/121 (44.63%), Postives = 69/121 (57.02%), Query Frame = 2
Query:   11 ICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNF 373
            I P+ KF++ +AN  I EA E E  +HIID  I QG QW  L H LA RPGG P VR+TG+  S  T      L+  GKRLS+FA    +PFEF   A     ++ + L V   EAV V++
Sbjct:  532 ISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMET------LEATGKRLSDFANKLGLPFEFFPVAEKVGNIDVEKLNVSKSEAVAVHW 646          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.734e-21
Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 2
Query:   11 ICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNF 373
            I P+ KF++ +AN  I EA E E  +HIID  I QG QW  L H LA RPGG PLVR+TG+  S         L+  GKRLS+FA    +PFEF   A     ++ Q L V   EAV V++
Sbjct:  503 ISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGLGTSME------ALEATGKRLSDFAQKLGLPFEFFPVADKVGNLDPQRLNVNKREAVAVHW 617          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.068e-20
Identity = 55/121 (45.45%), Postives = 70/121 (57.85%), Query Frame = 2
Query:   11 ICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNF 373
            I P+ KF++ +AN  I EA E E  +HIID  I QG QW  L H LA RPGG P VR+TG+  S         L+  GKRLS+FA +  +PFEF   A  A  V+ + L V   EAV V++
Sbjct:  386 ISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASME------ALEATGKRLSDFADTLGLPFEFCAVAEKAGNVDPEKLGVTRREAVAVHW 500          
The following BLAST results are available for this feature:
BLAST of CB322166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SCL13_ARATH9.472e-4665.08Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
CIGR2_ORYSJ2.260e-3962.90Chitin-inducible gibberellin-responsive protein 2 ... [more]
PAT1_ARATH5.566e-3857.14Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
SCL5_ARATH1.050e-3658.40Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
CIGR1_ORYSJ4.410e-3557.26Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL21_ARATH2.344e-2850.00Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
SCL1_ARATH5.974e-2442.86Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
SCR_PEA4.734e-2144.63Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]
SCR_IPONI4.734e-2145.45Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]
SCR_MAIZE3.068e-2045.45Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionEST0284 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB204 similar to scarecrow 13-like protein (acc# AAL31902), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322166 ID=CB322166; Name=CB322166; organism=Citrus sinensis; type=EST; length=380bp
ACTCTTTCAGATTTGTCCATATTGGAAGTTTGCTTACATGTCAGCAAATG
TCGTCATTGGGGAAGCAGTGGAGAATGAACATATAATTCACATCATTGAT
TTCCAAATTGCTCAGGGCACCCAGTGGATGTTCCTCCTCCATGCTCTTGC
AAAACGGCCTGGTGGATCCCCACTTGTCCGCATAACTGGGATTGATGATT
CCCAATCAACCCATGCTCGTGGTGGAGGACTTGATATTGTAGGGAAGAGA
CTGTCGGAGTTTGCTGCATCCTGCAATGTCCCATTTGAATTCCAAGATAC
TGCCATGACTGCTTGTGAGGTTGAACGACAACATCTAAGGGTTCAACCTG
GGGAAGCTGTGGTGGTGAATTTTCCTTTTG
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