CB322167

Overview
NameCB322167
Unique NameCB322167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB322167_ssr217 microsatellite CB322167_ssr217:217..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.557e-16
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV S+ALEGIQ EV DMDWEST+++RHLPQS I+EVPDLDEEYR
Sbjct:   65 FKELVASKALEGIQAEVTDMDWESTYFLRHLPQSNISEVPDLDEEYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.722e-15
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV S+ALEG+Q EV DMDWESTF+++HLP S I+EVPDLDEEYR
Sbjct:   65 FKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.937e-15
Identity = 34/47 (72.34%), Postives = 43/47 (91.49%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV S+ LE ++TEVNDMDWESTFY+RHLP+S I+EVPDL+++YR
Sbjct:   65 FKELVASKGLEAVKTEVNDMDWESTFYLRHLPKSNISEVPDLEDQYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.247e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV S+ LE +Q EV D+DWESTF++RHLP S I++VPDLDEEYR
Sbjct:   65 FKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.247e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV S+ LE +Q EV D+DWESTF++RHLP S I++VPDLDEEYR
Sbjct:   65 FKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.241e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV S+ LE +Q EV D+DWESTF++RHLP S I+EVPDLD+EYR
Sbjct:   65 FKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.241e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV S+ LE +Q EV D+DWESTF++RHLP S I+EVPDLD+EYR
Sbjct:   65 FKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV S+ LE +Q EV D+DWESTF++RHLP S I EVPDLD++YR
Sbjct:   65 FKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNICEVPDLDDQYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.590e-13
Identity = 28/47 (59.57%), Postives = 42/47 (89.36%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKE+V ++ L+ +Q+E++D+DWESTF++RHLP S I+E+PDL+EEYR
Sbjct:   65 FKEMVAAKGLDDVQSEIHDLDWESTFFLRHLPSSNISEIPDLEEEYR 111          
BLAST of CB322167 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.689e-13
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 3
Query:    3 FKELVVSRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYR 143
            FKELV  + LEG++ EV DMDWESTF++RHLP S I+++PDLD+ YR
Sbjct:   65 FKELVAKKGLEGVEVEVTDMDWESTFFLRHLPSSNISQLPDLDDVYR 111          
The following BLAST results are available for this feature:
BLAST of CB322167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACCO_DIOKA1.557e-1680.851-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO1_PETHY1.722e-1576.601-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO_PRUMU2.937e-1572.341-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO4_SOLLC3.247e-1470.211-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO1_SOLLC3.247e-1470.211-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO4_PETHY4.241e-1470.211-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCO3_PETHY4.241e-1470.211-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO_TOBAC2.749e-1368.091-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
ACCO1_MALDO3.590e-1359.571-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO2_SOLLC4.689e-1363.831-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]

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Properties
Property NameValue
Genbank descriptionEST0285 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB205 similar to ACC oxidase (acc# AAG49361), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322167 ID=CB322167; Name=CB322167; organism=Citrus sinensis; type=EST; length=335bp
GATTCAAGGAGCTTGTTGTAAGCAGGGCACTTGAAGGTATCCAAACCGAG
GTCAATGACATGGACTGGGAAAGCACTTTCTATGTGCGTCACCTCCCTCA
GTCGACCATCAATGAAGTCCCAGATCTTGATGAGGAATACAGGTGACAAA
CGAAAAAACGACACTCCTTTTTACCACAAGTAAAAAGCACATTTGTCACA
AACGCTCTTATGATCTTATATATATATGTATATATGATGTGCAGGAAGGT
GATGAAGGAATTTGCATTGAAATTGGAGAAATTAGCAGAGGAGCTATTGG
ACTTGTTATGCGAGAATCTTGGATTAGAGAAGGGG
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