CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9292 contig Csv1_Contig9292:324..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ARATH (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.981e-40
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = -3
Query:   79 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 423
            K G NLKVD LNL EIGPKFEHH +FPARTNTEFVE++S S LKMRVWER                   VLEG A+R+CTVDLPGGPL+IEWK+EDNH+YMTGPAE VFYGS LL
Sbjct:  248 KGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 362          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSJ (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.844e-36
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = -3
Query:   82 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 423
            KE + L VD L L++IGPKFEHH +FPARTNTEFVE++S S LKMRVWER                   VLEG AER+C VDLPGGPL+IEW+E+DNH+YMTGPAE VFYGS +
Sbjct:  240 KELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGSAV 353          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSI (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica GN=DAPF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.844e-36
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = -3
Query:   82 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 423
            KE + L VD L L++IGPKFEHH +FPARTNTEFVE++S S LKMRVWER                   VLEG AER+C VDLPGGPL+IEW+E+DNH+YMTGPAE VFYGS +
Sbjct:  243 KELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGSAV 356          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SYNY3 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803) GN=dapF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.095e-25
Identity = 55/104 (52.88%), Postives = 66/104 (63.46%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            VD LNL EIGP FEHH  F  RTNTEF++++   +LKMRVWER                   VL G  +RRCTV+LPGG L+IEW  +DN +YMTGPA+ VF G
Sbjct:  172 VDSLNLTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAVLTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSG 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP6 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 58/103 (56.31%), Postives = 68/103 (66.02%), Query Frame = -3
Query:   79 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 387
            LAEIGP FEHH VFP RTNTEFVE++ P  LKMRVWER                   VL G ++R+ TV+LPGGPL IEW+ ED H++MTGPA  VF GS+ L
Sbjct:  177 LAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAAVLTGRSDRQATVELPGGPLQIEWR-EDGHLFMTGPAVKVFSGSMEL 278          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SYNE7 (Diaminopimelate epimerase OS=Synechococcus elongatus (strain PCC 7942) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 58/103 (56.31%), Postives = 68/103 (66.02%), Query Frame = -3
Query:   79 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 387
            LAEIGP FEHH VFP RTNTEFVE++ P  LKMRVWER                   VL G ++R+ TV+LPGGPL IEW+ ED H++MTGPA  VF GS+ L
Sbjct:  177 LAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAAVLTGRSDRQATVELPGGPLQIEWR-EDGHLFMTGPAVKVFSGSMEL 278          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_MICAN (Diaminopimelate epimerase OS=Microcystis aeruginosa (strain NIES-843) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.186e-25
Identity = 54/99 (54.55%), Postives = 62/99 (62.63%), Query Frame = -3
Query:   91 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 387
            L  IGPKFEHH VFP RTN EFVE+I+P  +KMRVWER                   +L G  +RRCTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct:  179 LETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVAALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 277          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP7 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7424) GN=dapF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.099e-25
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V  + L  IGP+FEHH  FP RTNTEF+E++ P  LKMRVWER                   VL G ++RRCTV+LPGG L I W E D HVYMTGPA+ VF G
Sbjct:  174 VKSIALETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVAGVLTGKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTG 277          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP2 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.523e-24
Identity = 53/108 (49.07%), Postives = 62/108 (57.41%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V  + L  IG  FEHH  FP R NTEF+E++ P  +KMRVWER                   VL GH +R CTV+LPGG L IEW   DNH+YMTGPA + F G V L
Sbjct:  174 VAAIALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGVLTGHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF2_ANASP (Diaminopimelate epimerase 2 OS=Anabaena sp. (strain PCC 7120) GN=dapF2 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.848e-24
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            V  + L  IGPKFEHH  FP RTNTEF++++S   LKMRVWER                   VL G ++R  TV+LPGGPL+IEW E D  +YMTGPA+ VF G +
Sbjct:  174 VAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_ARATH5.981e-4067.83Diaminopimelate epimerase, chloroplastic OS=Arabid... [more]
DAPF_ORYSJ6.844e-3662.28Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_ORYSI6.844e-3662.28Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_SYNY31.095e-2552.88Diaminopimelate epimerase OS=Synechocystis sp. (st... [more]
DAPF_SYNP61.868e-2556.31Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNE71.868e-2556.31Diaminopimelate epimerase OS=Synechococcus elongat... [more]
DAPF_MICAN3.186e-2554.55Diaminopimelate epimerase OS=Microcystis aeruginos... [more]
DAPF_CYAP77.099e-2552.88Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_SYNP23.523e-2449.07Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF2_ANASP7.848e-2450.00Diaminopimelate epimerase 2 OS=Anabaena sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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