CB322180

Overview
NameCB322180
Unique NameCB322180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig665 contig Csv1_Contig665:447..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 9.765e-36
Identity = 78/141 (55.32%), Postives = 88/141 (62.41%), Query Frame = 3
Query:   60 NTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAKKPTQSXXXXXXXXXXXXXXXXXXXXXXXXVEDAGXXXXXXXXXXXXXXXXXXSKMILDEWKRL 482
            NTHLASNTYLVGHSVTLADI+MTCNL +GF+RI+TKSFTSEFPHVERYFWTMVN PNF+K+LG++KQAESVPPVQ    P +                          E+                    SKMILDEWKRL
Sbjct:  142 NTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPVQKKAPPPKEQKPKEAKKEAPKEAPKPKAVEKPEEEEEA----PKPKPKNPLDLLPPSKMILDEWKRL 278          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.842e-34
Identity = 81/160 (50.62%), Postives = 89/160 (55.62%), Query Frame = 3
Query:    3 LPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAKKPTQSXXXXXXXXXXXXXXXXXXXXXXXXVEDAGXXXXXXXXXXXXXXXXXXSKMILDEWKRL 482
            +P  EE             NTHLASNTYLVGHSVTLADI+MTCNL  GF RIL KSFTSEFPHVERYFWTMVN PNF+K++G+ KQAESVPPVQ    P +                         VE +                   SKMILDEWKRL
Sbjct:  123 VPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQKKAAPPKE------SKAKEAKKEAPKEAPKPKVEASEEEEAPKPKPKNPLDLLPPSKMILDEWKRL 276          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.405e-34
Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 3
Query:    3 LPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAKKPTQ 305
            LP AEE             NTHLASNTYLVGH VTLADII+TCNL  GF++++ KSFTSEFPHVERYFWT+VN P F+K+LG++KQ ESVPPV SAKKP+Q
Sbjct:  123 LPPAEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLMIKSFTSEFPHVERYFWTLVNQPKFKKVLGDVKQTESVPPVPSAKKPSQ 223          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.194e-33
Identity = 76/142 (53.52%), Postives = 89/142 (62.68%), Query Frame = 3
Query:   60 NTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQ-SAKKPTQSXXXXXXXXXXXXXXXXXXXXXXXXVEDAGXXXXXXXXXXXXXXXXXXSKMILDEWKRL 482
            NTHLASNTYLVGHSVTLADI+MTCNL +GF+RI+TK+FTSEFPHVERYFWTMVN PNF+K++G++KQA+SVP VQ  A  P +                          E+A                   SKMILDEWKRL
Sbjct:  142 NTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQADSVPQVQKKAAAPKEQKPKEAKKEAPKEAPKPKAAEKPEEEEEA-----PKPKPKNPLDLLPPSKMILDEWKRL 278          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.752e-30
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   12 AEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAK 293
            AEE             NTHL SNTYLVGHS+TLADII  CNL LGF+ ++TK FTSEFPHVERYFWT+VN PNF K+LG++KQ E+VPP+ S K
Sbjct:  126 AEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVERYFWTVVNQPNFTKVLGDVKQTEAVPPIASKK 219          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.366e-29
Identity = 60/96 (62.50%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   12 AEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAKKP 299
            AEE             NTHLASNT+LVGHSVTLADI+  CNL LGF+ ++TK FTS FPHVERYFWTMVN P F+K+LG+ KQ E+VPPV + K P
Sbjct:  126 AEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPVPTKKAP 221          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 3
Query:   60 NTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAK 293
            +THL + T+LVG  VTLADI + C L   + ++L  SF   FP+  R+F T +N P FR ILGE+K  E +    + K
Sbjct:  143 DTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKMAQFDAKK 220          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 3
Query:   60 NTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAK 293
            +THL + T+LVG  VTLADI + C L   + ++L  SF   FP+  R+F T +N P FR ILGE+K  E +    + K
Sbjct:  143 DTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKMAQFDAKK 220          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 3
Query:   60 NTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAK 293
            + HL + T+LVG  VTLADI + C L   + ++L  SF   FP+  R+F T +N P FR +LGE+K  E +    + K
Sbjct:  143 DAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKK 220          
BLAST of CB322180 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 3
Query:   60 NTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTMVNIPNFRKILGEIKQAESVPPVQSAK 293
            + HL + T+LVG  VTLADI + C L   + ++L  SF   FP+  R+F T +N P FR +LGE+K  E +    + K
Sbjct:  138 DAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKK 215          
The following BLAST results are available for this feature:
BLAST of CB322180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
EF1G2_ORYSJ9.765e-3655.32Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G3_ORYSJ1.842e-3450.63Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV2.405e-3467.33Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G1_ORYSJ1.194e-3353.52Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G1_ARATH2.752e-3063.83Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G2_ARATH1.366e-2962.50Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G_RAT1.981e-1243.59Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1G_MOUSE1.981e-1243.59Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_RABIT9.833e-1241.03Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_PIG9.833e-1241.03Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionEST0301 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB227 similar to elongation factor 1 gamma (acc# AAL82617), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322180 ID=CB322180; Name=CB322180; organism=Citrus sinensis; type=EST; length=482bp
ACCTTCCTCAGGCTGAGGAAGCTGCAATTGCTTCTTTGAAGAGAGCTCTA
GCTGCATTGAATACACATCTCGCTTCCAACACTTACTTAGTTGGCCATTC
AGTGACTTTGGCTGATATCATTATGACATGTAACTTGACGTTGGGATTCA
GTCGGATCCTGACCAAGAGCTTTACATCAGAATTCCCTCACGTTGAGAGA
TACTTTTGGACAATGGTTAACATACCAAATTTCCGCAAGATATTGGGAGA
GATAAAGCAAGCAGAATCTGTCCCTCCTGTTCAGTCAGCGAAGAAGCCCA
CGCAGTCAAAAGAGCCTGCAAAACCCAAGGCCCAGGCTGAGCCAAAGAAA
GAGGCTGCAAAAGAAACAGCAAAACCTAAAGTTGAAGACGCTGGTGAGGA
AGAGGCACCAAAGCCCAAGCCAAAGAATCCACTTGACCTTTTGCCTCCCA
GCAAGATGATTTTGGATGAGTGGAAGAGGCTG
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