CB322185

Overview
NameCB322185
Unique NameCB322185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.680e-39
Identity = 84/117 (71.79%), Postives = 100/117 (85.47%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDSFDDILKLYEGGIDLPNN-LLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D ++ESRL I  SL+IYVPRDERFGHLKMSDFLA+ALK+IAQ I+PALE++ D +P EFDSF+D+LK+YE GIDLPN  L+D I K+IP EMLKEIFRTDG   LKFP+PQVIKED+
Sbjct:  241 DPQTESRLPITSSLDIYVPRDERFGHLKMSDFLAYALKAIAQFIQPALEAVFDDTPKEFDSFEDVLKIYEEGIDLPNQALIDSIVKNIPLEMLKEIFRTDGQKFLKFPVPQVIKEDK 357          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.928e-33
Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDSFDDILKLYEGGIDLPNN-LLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D KSESR+ ++ SL+IYVPRDERFGHLKMSDFL +ALKSI Q I P L +L D +PNEFDSF+D+L+LYEGGI LP   L   +   IP EM++E+ RTDG+ +L+FP P VIK+ +
Sbjct:  242 DPKSESRIPLILSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTDAIPLEMIRELLRTDGEGILRFPTPLVIKDSK 358          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.928e-33
Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDSFDDILKLYEGGIDLPNN-LLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D KSESR+ ++ SL+IYVPRDERFGHLKMSDFL +ALKSI Q I P L +L D +PNEFDSF+D+L+LYEGGI LP   L   +   IP EM++E+ RTDG+ +L+FP P VIK+ +
Sbjct:  243 DPKSESRIPLILSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTAAIPLEMIRELLRTDGEGILRFPTPLVIKDSK 359          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.742e-28
Identity = 64/117 (54.70%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES-LDSSPNEFDSFDDILKLYEGGIDLPN-NLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D  SESRLS+V    IYVPRDERFGHLKM+DFL +++K+IA+ I PA+ + +D++P EFDSF DIL LYEGG+ LP+   L+++RK  P +++K++    GD +LK PMPQ+IK+D+
Sbjct:  243 DPDSESRLSLVEQ--IYVPRDERFGHLKMADFLGYSIKAIAEGIVPAIRTYVDTTPGEFDSFQDILDLYEGGLKLPDVPALEELRKRFPLQLVKDLLPAAGDYILKLPMPQIIKQDK 357          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.070e-28
Identity = 62/117 (52.99%), Postives = 89/117 (76.07%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES-LDSSPNEFDSFDDILKLYEGGIDLPN-NLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D  +ESRL ++  LNIYVPRDERFGHLKMSDFL ++LK+I + + P + + +D++P EFDSF DI++LYEGG+ + N + L +I+K +PFE++K +    GD +LK P+P VIKED+
Sbjct:  249 DPNTESRLPLL-DLNIYVPRDERFGHLKMSDFLGYSLKAIVEGVLPIIRTYVDTTPKEFDSFQDIMELYEGGLKVANASALAEIKKRVPFELIKSLLPVAGDQVLKLPLPHVIKEDK 364          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.129e-27
Identity = 63/117 (53.85%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES-LDSSPNEFDSFDDILKLYEGGIDLPN-NLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D  +ESRLS++   NIYVPRDERFGHLKM+DFL +++K++   I PA+ + +D +P EFDSF DILKLYEGG+ LP+   L+++RK  P +++K++    GD LLK PMP VI+ED+
Sbjct:  240 DPTAESRLSLLE--NIYVPRDERFGHLKMADFLGYSIKALVDGIVPAIRTYVDLTPGEFDSFKDILKLYEGGLKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVIREDK 354          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.926e-27
Identity = 62/115 (53.91%), Postives = 87/115 (75.65%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDSFDDILKLYEGGIDLPN-NLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKE 498
            D KSESRL+++ +LNIYVPRDERF H+K SDFLA+ALKS+ QV+ P + S+ D + NEFDSF+D+  LY+G I L N + +  +R  IP+EM +E+ R DG+  LK+P+P ++KE
Sbjct:  264 DPKSESRLALL-NLNIYVPRDERFSHVKFSDFLAYALKSVTQVLVPEIASVCDKTINEFDSFEDVFHLYDGSIKLANGHTISKLRDVIPWEMFRELVRNDGERFLKYPLPDILKE 377          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.197e-26
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDSFDDILKLYEGGIDLPNN-LLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D   ESR  +  SL+IYVPRDERFGH+K SDFL  +LKS  Q + PA ++L D++PNEF+SF D+L LYEGGI LP    L  I  +I  E+LK+I +TDG  LLK+P PQVI+ D+
Sbjct:  241 DPNCESRNPLPMSLDIYVPRDERFGHVKKSDFLTSSLKSSLQTLLPAFKALCDNTPNEFNSFADVLNLYEGGIKLPEGPWLKAITDNISSEILKDILQTDGQGLLKYPTPQVIQGDK 357          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.057e-25
Identity = 61/117 (52.14%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES-LDSSPNEFDSFDDILKLYEGGIDLPN-NLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D  SESRLS++    IYVP DERF HLKMSDF  +++K+I Q I PA+ + +D +P EFDSF+DILKLY GG+ LP+   L+++RK  P +++K++    G  LLKFP P +IKE+E
Sbjct:  240 DPNSESRLSLLEQ--IYVPSDERFAHLKMSDFAGYSIKAIVQGILPAIRTYVDLTPGEFDSFEDILKLYRGGLKLPSIPALEELRKSFPVQLIKDLLPVGGSYLLKFPKPDIIKENE 354          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.355e-25
Identity = 59/117 (50.43%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES-LDSSPNEFDSFDDILKLYEGGIDLPN-NLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            D   ESRLS++    IYVPRDE+FGHLK SDFL +++K+I Q I PA+ + +D++P EFDSF DI+ LYEGGI LP    L+++RK  P +++K++    GD LLK P+P +I+E++
Sbjct:  238 DPSLESRLSLLEQ--IYVPRDEKFGHLKTSDFLGYSIKAITQGILPAVRTYVDTTPGEFDSFQDIINLYEGGIKLPKVAALEELRKQFPLQLIKDLLPVGGDSLLKLPVPHIIQENK 352          
The following BLAST results are available for this feature:
BLAST of CB322185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
LOX1_ARATH1.680e-3971.79Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOXA_SOLLC8.928e-3360.68Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU8.928e-3360.68Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX3_ORYSJ1.742e-2854.70Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX4_ORYSJ5.070e-2852.99Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX2_ORYSJ1.129e-2753.85Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX5_ARATH1.926e-2753.91Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXB_SOLLC6.197e-2655.56Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_ORYSJ1.057e-2552.14Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_HORVU2.355e-2550.43Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0306 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB262 similar to lipoxygenase (acc# CAD10740), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322185 ID=CB322185; Name=CB322185; organism=Citrus sinensis; type=EST; length=506bp
GTTGAGTTACTAGTAACAAAAGCCTAATCATTTTAAAGTTAACTTGAATC
TTATATAGATTGGACGACAACTATACTTTATGAATTGCTAGTTTTCAAGT
AATTGAAGTTCTCTCGGTAGCATTGATGCATTCATTAATGGTATTTTGTT
GTTATCATAATAGATTCTAAAAGCGAGAGCAGGCTGTCAATTGTCTATAG
CTTAAACATATATGTTCCAAGAGATGAGCGATTTGGTCACTTGAAGATGT
CAGATTTCCTTGCTTTTGCTCTCAAATCCATAGCCCAAGTCATAAAACCA
GCATTGGAATCTCTAGACAGCAGTCCAAATGAATTTGACTCTTTTGATGA
TATTTTAAAACTCTATGAAGGAGGGATTGATCTGCCAAACAACTTACTTG
ATGATATTAGAAAACACATCCCCTTTGAAATGCTCAAAGAAATTTTTCGA
ACTGATGGTGATCTCTTGAAATTTCCAATGCCACAAGTAATCAAAGAGGA
TGAGTC
back to top