CB322188

Overview
NameCB322188
Unique NameCB322188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3018 contig Csv1_Contig3018:146..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.630e-24
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRMD 177
            TFFGNYKPRSD+PSVVEKYMNKELE+EKFITHT+PF+EINKAFDLML GE +RCII M+
Sbjct:  321 TFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITME 379          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.630e-24
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRMD 177
            TFFGNYKPRSD+PSVVEKYMNKELE+EKFITHT+PF+EINKAFDLML GE +RCII M+
Sbjct:  321 TFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITME 379          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.630e-24
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRMD 177
            TFFGNYKPRSD+PSVVEKYMNKELE+EKFITHT+PF+EINKAFDLML GE +RCII M+
Sbjct:  321 TFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITME 379          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRM 174
            TFFGNYKPRSD+P VVEKYMNKELE+EKFITHT+PF+EINKAFDLML GE +RCII M
Sbjct:  321 TFFGNYKPRSDIPCVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITM 378          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRM 174
            TFFGNYKP++D+P VVEKYMNKELE+EKFITHT+PFSEINKAFD ML GESIRCII M
Sbjct:  320 TFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEINKAFDYMLKGESIRCIITM 377          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRMD 177
            TFFGNYKPR+D+PSVVEKYMNKELEV+KFITH +PFS+INKAFD ML GE IRCII M+
Sbjct:  321 TFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQINKAFDYMLKGEGIRCIITME 379          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRMD 177
            TF+GNYKPR+DLP+VVEKYM  ELE+EKFITHT+PFSEINKAFD ML GESIRCII+M+
Sbjct:  321 TFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIKME 379          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRMD 177
            TFFGNYKPR+DLP+VVE YM KELE+EKFITH++PFSEIN AFDLML GES+RC++RMD
Sbjct:  320 TFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCVMRMD 378          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRMD 177
            TFFGNYKPR+DLP+VVE YM KELE+EKFITH++PFSEIN AFDLML GES+RC++RMD
Sbjct:  320 TFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCVMRMD 378          
BLAST of CB322188 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 TFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTMPFSEINKAFDLMLAGESIRCIIRMD 177
            TFFGNYKPR+DLP+VVE YM KELEVEKFITH++PF+EINKAFDLM  GE IRCIIRM+
Sbjct:  320 TFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLMAKGEGIRCIIRME 378          
The following BLAST results are available for this feature:
BLAST of CB322188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ADH3_SOLTU2.630e-2484.75Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLTU2.630e-2484.75Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADH1_SOLTU2.630e-2484.75Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLLC1.705e-2384.48Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH1_ARATH2.908e-2384.48Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH_FRAAN6.478e-2381.36Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]
ADH1_PEA1.105e-2281.36Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
ADH2_ORYSJ1.443e-2279.66Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI1.443e-2279.66Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
ADH1_MAIZE1.885e-2281.36Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionEST0310 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB269 similar to alcohol dehydrogenase (AAA98984), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322188 ID=CB322188; Name=CB322188; organism=Citrus sinensis; type=EST; length=395bp
ACCTTCTTTGGCAACTACAAACCTCGCTCTGATCTTCCTTCTGTTGTTGA
AAAATACATGAACAAGGAGTTGGAGGTCGAGAAATTCATCACTCACACTA
TGCCCTTCTCGGAGATAAACAAGGCATTTGACCTCATGCTTGCGGGAGAA
AGCATTAGGTGCATCATTCGCATGGATGGTTAGATGTGTCTGCTGTTGCT
GATCAATCTAATGGAGGCAGAATGAAGATGATCACATAATTTTCCAAGTT
ATATATTACCCCGAGAATAAGTAATTTATGCTGTATGTTTGATGACTTGC
TGCGAATGGCTTTCAAAGAGTTGTGTTTTCTACATATTTCTTACAGTCCC
TTTTTTTGTTTTGTTTTTCTGTTTGATGACTTGCTGCATATGGCG
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