CB322190

Overview
NameCB322190
Unique NameCB322190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2591 contig Csv1_Contig2591:117..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.249e-33
Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 1
Query:   67 MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEV-HTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            M P  Q +LP NENDSQ+MV+Y+V+NE+ A NI ++PQR+++   +++L P + I KK YRGVRRRPWGK+AAEIRDSARHG R+WLGTFET            FRMRGAKALLNF
Sbjct:    1 MVPTPQSDLPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNNILRPLQCIGKK-YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNF 115          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   76 ASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTIS----KKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            ++   LPFNENDS++M +Y +I +ST        Q++ + + S   P +++S    +K YRGVRRRPWGKFAAEIRDS R+G R+WLGTFE+            F MRG+ A+LNF
Sbjct:   31 SNNYSLPFNENDSEEMFLYGLIEQST--------QQTYIDSDSQDLPIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNF 138          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   91 LPFNENDSQDMVIYQVINES-----TAQNISFM-------PQRSEVHTSSMLEPKRTI-------SKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            LP  ENDS+DM++Y ++ ++     ++ ++S +        + +E  T+   +PK+ I         KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFET            FRMRG++ALLNF
Sbjct:   48 LPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 57/141 (40.43%), Postives = 72/141 (51.06%), Query Frame = 1
Query:   70 FPASQIELPFNENDSQDMVIYQVINE------------STAQNISFMPQRSEVHTSSMLEPKRTISK---------------KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            F  S  +LP  ENDS+DM++Y ++N+            S     SF   + E   S        + K               KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFET            FRMRG++ALLNF
Sbjct:   64 FTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.670e-19
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   88 ELPFNENDSQDMVIYQVINES----------TAQNISFMPQRS-EVHTSSMLEPKRTISK------KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            +LP   NDS+DMVIY  + ++          T++ +   P+   E   S+ + P            +HYRGVR+RPWGKFAAEIRD A++G R+WLGT+E+            FRMRG KALLNF
Sbjct:   39 DLPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNF 163          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   88 ELPFNENDSQDMVIYQVINESTAQNISFMP-----------QRSEVHTSSMLE----PKRTISK-KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            +LP   +DS+DMVIY ++ +  A N+ + P           QR E    S  E    P   + + +HYRGVRRRPWGKFAAEIRD A++G R+WLGT+ET            +RMRG+KA LNF
Sbjct:   40 DLPLKVDDSEDMVIYTLLKD--ALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNF 161          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1
Query:   88 ELPFNENDSQDMVIYQVINES----------TAQNISFMPQR----SEVHTSSMLEPKRTISK-------KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            +LP   +DS+DMVIY +++++          T+  I   P+     + +   S+  P  T +        +HYRGVR+RPWGKFAAEIRD A++G R+WLGT+ET            +RMRG+KALLNF
Sbjct:   27 DLPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 155          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 1
Query:   88 ELPFNENDSQDMVIYQVINES----------TAQNISFMPQRS-EVHTS---SMLEPKRTISK-------KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            +LP   +DS+DMVIY +++++          T+  I   P+   E  TS   S+  P  T +        +HYRGVR+RPWGKFAAEIRD A++G R+WLGT+ET            +RMRG+KALLNF
Sbjct:   31 DLPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 159          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 49/113 (43.36%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   73 PASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            P  +   P  + DS    I Q+  ES++ + +      E   S+  + KR    +HYRGVRRRPWGKFAAEIRD A+ G RIWLGTFE+            F++RG KA+LNF
Sbjct:   52 PKLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVET-VSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNF 163          
BLAST of CB322190 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   88 ELPFNENDSQDMVIYQVINE--STAQNISFMPQRSEVHTSSMLEPKRTISKKH--------YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 411
            +LP + +DSQDM IY  + +  S+    S  P  S    +    P    S  H        YRGVRRRPWGKFAAEIRD  ++G R+WLGT+ET            F++RG+KA LNF
Sbjct:   33 DLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENK--PPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNF 148          
The following BLAST results are available for this feature:
BLAST of CB322190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PTI5_SOLLC3.249e-3360.34Pathogenesis-related genes transcriptional activat... [more]
ERF92_ARATH7.507e-2246.55Ethylene-responsive transcription factor 1B OS=Ara... [more]
EF101_ARATH1.084e-2042.86Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH4.119e-2040.43Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_SOLLC2.670e-1941.60Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF1_TOBAC3.487e-1944.35Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_TOBAC4.554e-1940.31Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY5.948e-1942.64Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF107_ARATH4.263e-1743.36Ethylene-responsive transcription factor ERF107 OS... [more]
ERF99_ARATH7.271e-1742.37Ethylene-responsive transcription factor 13 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionEST0312 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB271 similar to pathogenesis-related transcriptional activator PTI5 (acc# AAC49740), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322190 ID=CB322190; Name=CB322190; organism=Citrus sinensis; type=EST; length=587bp
CGAATCCTATAGAATCAGAGCGCGCGATACCCATAAAACCAAAAGAAATA
GCCGATCAAAGAAGCCATGTTTCCGGCCTCCCAAATTGAGCTACCATTTA
ATGAAAATGATTCACAAGACATGGTCATATACCAAGTCATAAATGAATCG
ACGGCCCAAAATATTTCATTCATGCCTCAAAGAAGCGAAGTTCACACATC
AAGCATGCTTGAACCGAAACGGACCATAAGCAAGAAGCACTACAGAGGCG
TGAGGCGTCGGCCATGGGGCAAATTCGCGGCTGAGATTCGAGACTCAGCC
AGACACGGCCAACGGATATGGCTGGGCACGTTTGAAACAGCAGAAGAGGC
TGCCCTGGCTTACGATAGAGCTGCTTTTCGGATGCGTGGTGCTAAGGCGT
TGCTTAATTTTCCGGCCGAAGTGGTTGCTGCTCCGTGTCCATCATCTTCG
CCATCGCTTGAAAAATCGAATGTAAAATTGAGCTCAATATTGGAGAACAA
TCCAGAGGTGAGTGGCAGTAGCTCTAGCACGGTTTCAACTGCGACTCAGA
GATCGGAATCGGAGTAATTAAGTAGTCAAAGTGCTAG
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