CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig371 contig Csv1_Contig371:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_ORYSJ (Lysyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 3.538e-74
Identity = 125/151 (82.78%), Postives = 141/151 (93.38%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE MLSGM+KE+TG YKIKYH+NG++K PIEIDFTPPFR+IDM+EELE +A L IPKDL+S EANKYL DAC K+D+KCPPPQTT RLLDKLVGHFLEETCVNP+FIINHPEIMSPLAK+HRS+PGLTERFELF+NKHEVCNAYTELNDP+
Sbjct:  381 TETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRKIDMIEELEAMAKLNIPKDLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPV 531          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_ARATH (Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 7.378e-72
Identity = 125/151 (82.78%), Postives = 138/151 (91.39%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE MLSGM+KE+TG YKIKY++NG DKDPIEIDFTPPFRRI+M+ ELEK+A L IPKDLAS EANKYL DAC +FD+KCPPPQTTARLLDKLVG FLE TCVNP+FIIN PEIMSPLAK+HRSK GLTERFELFINKHE+CNAYTELNDP+
Sbjct:  390 TEVMLSGMVKELTGGYKIKYNANGYDKDPIEIDFTPPFRRIEMIGELEKVAKLNIPKDLASEEANKYLIDACARFDVKCPPPQTTARLLDKLVGEFLEPTCVNPTFIINQPEIMSPLAKWHRSKSGLTERFELFINKHELCNAYTELNDPV 540          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SOLLC (Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 2.079e-66
Identity = 110/150 (73.33%), Postives = 134/150 (89.33%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE++LSGM+K++TGSYKI+YH+NGLD +PIEIDFTPPFR+IDM+ ELEK+AN+ IP+DL+S  ANK+L D C KFD+KCPPP TT RLLDKLVGHF+E  C+NP+FIINHPEIMSPLAK  RS+PGLTERF LF+N+ E+C+AYTELNDP
Sbjct:  368 TEQLLSGMVKDLTGSYKIRYHANGLDNEPIEIDFTPPFRKIDMLSELEKVANISIPRDLSSESANKHLVDVCEKFDVKCPPPHTTTRLLDKLVGHFIEVNCINPTFIINHPEIMSPLAKSRRSEPGLTERFNLFVNRRELCDAYTELNDP 517          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CRIGR (Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KARS PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 3.679e-55
Identity = 102/153 (66.67%), Postives = 122/153 (79.74%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKD--LASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TEKMLSGM+K ITGSYKI YH +G + +  EIDFTPPFRRI MVEELEK   +++P+     + E  K L D CV   ++CPPP+TTARLLDKLVG FLE TC+NP+FI +HP+IMSPLAK+HRSK GLTERFELF+ K E+CNAYTELNDP+
Sbjct:  354 TEKMLSGMVKSITGSYKITYHPDGPEGEAYEIDFTPPFRRISMVEELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPM 506          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MOUSE (Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.826e-54
Identity = 100/153 (65.36%), Postives = 121/153 (79.08%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKD--LASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TEKMLSGM+K ITGSYKI YH +G +    E+DFTPPFRRI MVEELEK   +++P+     + E  K L D CV   ++CPPP+TTARLLDKLVG FLE TC++P+FI +HP+IMSPLAK+HRSK GLTERFELF+ K E+CNAYTELNDP+
Sbjct:  352 TEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVEELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCISPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPV 504          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_HUMAN (Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 3.114e-54
Identity = 98/153 (64.05%), Postives = 122/153 (79.74%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKD--LASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TEKM+SGM+K ITGSYK+ YH +G +    ++DFTPPFRRI+MVEELEK   +++P+     + E  K L D CV   ++CPPP+TTARLLDKLVG FLE TC+NP+FI +HP+IMSPLAK+HRSK GLTERFELF+ K E+CNAYTELNDP+
Sbjct:  354 TEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPM 506          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYKC_SCHPO (Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=krs1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.390e-46
Identity = 85/151 (56.29%), Postives = 112/151 (74.17%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPK--DLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE++LSG++K++TGSYK+ YH  G +    E+DF+ P+RRI+M+E LE+  N + P    L + EAN +L D C K  ++C PPQT +RLLDKLVG F+E  C+NP+FII HP++MSPLAKYHRS  GL ERFE F+   E+CNAYTELND
Sbjct:  358 TEELLSGLVKDLTGSYKVPYHPEGPEGPKWELDFSRPWRRINMIEYLEEKLNTKFPPGDQLHTPEANAFLRDLCAKHGVECAPPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAKYHRSDAGLCERFEAFVATKEICNAYTELND 508          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYKC_YEAST (Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=KRS1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.227e-42
Identity = 84/153 (54.90%), Postives = 112/153 (73.20%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDK-DPIEIDFTPPFRRIDMVEELEKIANLQIPK--DLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE M S M+KEITGSY IKYH +  D    +E++F+ P++RI+M+EELEK+ N++ P    L + E  ++L    V   ++CPPP T AR+LDKLVG  LE+TC+NP+FI  HP++MSPLAKY R +PGL ERFE+F+   E+CNAYTELNDP
Sbjct:  357 TELMFSEMVKEITGSYIIKYHPDPADPAKELELNFSRPWKRINMIEELEKVFNVKFPSGDQLHTAETGEFLKKILVDNKLECPPPLTNARMLDKLVGE-LEDTCINPTFIFGHPQMMSPLAKYSRDQPGLCERFEVFVATKEICNAYTELNDP 508          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CAEEL (Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.664e-42
Identity = 86/154 (55.84%), Postives = 111/154 (72.08%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPI-EIDFTPPFRRIDMVEEL-EKI-ANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +LS M+  I G+YKI+YH NG + +P+ E+DFTPPF+R+ M + L EK+ A L  P  L + EA +     C   ++ C  P+TTARLLDKLVG +LE T ++P+F+I HP+IMSPLAK+HRS PGLTERFELF    E+ NAYTELNDPI
Sbjct:  333 TEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLESTFISPTFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPI 486          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYKC_NOSCE (Probable lysyl-tRNA synthetase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100909 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.233e-39
Identity = 80/153 (52.29%), Postives = 107/153 (69.93%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKD--PIEIDFTPPFRRIDMVEELEKIANLQIPK-DLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E+ML+GM K + GS KI Y  N  +K+  P+EI+F  PF R  M+EEL K+  +++   ++ S E    L + C K++IK   P+T  R+LDKLVGHF+E  C+NPSFII +P + SPLAK HRS+ G+ ERFELFIN  E+CNAYTELN+PI
Sbjct:  289 EEMLNGMCKYLHGSEKIVYAPNKREKEVKPVEINFARPFARFHMLEELSKVVGIKLDGLNINSDETLDLLIETCDKYEIKVEQPKTLTRVLDKLVGHFIEPKCINPSFIIGYPLVTSPLAKNHRSEAGMVERFELFINGKEICNAYTELNNPI 441          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_ORYSJ3.538e-7482.78Lysyl-tRNA synthetase OS=Oryza sativa subsp. japon... [more]
SYK_ARATH7.378e-7282.78Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=A... [more]
SYK_SOLLC2.079e-6673.33Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=L... [more]
SYK_CRIGR3.679e-5566.67Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KAR... [more]
SYK_MOUSE1.826e-5465.36Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1... [more]
SYK_HUMAN3.114e-5464.05Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1... [more]
SYKC_SCHPO2.390e-4656.29Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccha... [more]
SYKC_YEAST1.227e-4254.90Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyce... [more]
SYK_CAEEL4.664e-4255.84Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN... [more]
SYKC_NOSCE8.233e-3952.29Probable lysyl-tRNA synthetase, cytoplasmic OS=Nos... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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