CB322193

Overview
NameCB322193
Unique NameCB322193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3241 contig Csv1_Contig3241:550..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322193 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.792e-43
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1
Query:    1 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 255
            GTCSIDTTCTIWDIEK VVETQLIAHDKEV+DI WGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR
Sbjct:  149 GTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 233          
BLAST of CB322193 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.445e-35
Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 1
Query:    1 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 255
            GT SIDTTCTIWDIE+ VV+TQLIAHDKEVYDI WG   VFASVS DGSVR+FDLRDKEHSTIIYES +P TPL+RL+WNKQD R
Sbjct:  152 GTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPR 236          
BLAST of CB322193 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.582e-35
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 1
Query:    1 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 255
            GT S DTTCTIWDIE+  V+TQLIAHDKEV+DI WG   VFASVSADGSVR+FDLRDKEHSTIIYES +PDTPL+RL WNKQD R
Sbjct:  152 GTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 236          
BLAST of CB322193 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.113e-25
Identity = 57/83 (68.67%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    4 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEAR-VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQD 249
            T SIDTTCTIW+IE G  +TQLIAHDKEV+DI +     +FASV ADGS+R+FDLR+ EHSTIIYE+P    PLLRL WNKQD
Sbjct:  135 TSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASVGADGSLRMFDLRNLEHSTIIYETPS-FVPLLRLCWNKQD 216          
BLAST of CB322193 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.611e-24
Identity = 62/98 (63.27%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 GTCSIDTTCTIWDIEKGVV-----------ETQLIAHDKEVYDICWGEAR----VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQD 249
            GT SIDTTCTIW +E G V           +TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WNKQD
Sbjct:  137 GTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQD 233          
BLAST of CB322193 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.611e-24
Identity = 62/98 (63.27%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 GTCSIDTTCTIWDIEKGVV-----------ETQLIAHDKEVYDICWGEAR----VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQD 249
            GT SIDTTCTIW +E G V           +TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WNKQD
Sbjct:  137 GTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQD 233          
BLAST of CB322193 vs. ExPASy Swiss-Prot
Match: YBE8_SCHPO (Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe GN=SPBC17D11.08 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.437e-17
Identity = 49/92 (53.26%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   10 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDKEHSTIIYE---------------SPQPDTPLLRLA 234
            S+DTTCT+WDI     +TQLIAHDKEVYD+ +      VF SV ADGSVR+FDLR  +HSTIIYE               SP    PLLRL+
Sbjct:  186 SLDTTCTVWDIVAQQSKTQLIAHDKEVYDVAFLKDSINVFVSVGADGSVRMFDLRSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLS 277          
BLAST of CB322193 vs. ExPASy Swiss-Prot
Match: YP247_YEAST (WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae GN=YPL247C PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.138e-14
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   10 SIDTTCTIWDIEKG-VVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDKEHSTIIYESP 204
            SIDTTC +WD++    V+TQLIAHD EV+D+ +     ++FAS   DGSVR+FDLR   HSTIIYE P
Sbjct:  263 SIDTTCIVWDLQSSHYVKTQLIAHDSEVFDVRFLTKSTQLFASCGGDGSVRVFDLRSLAHSTIIYEPP 330          
The following BLAST results are available for this feature:
BLAST of CB322193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TTG1_ARATH5.792e-4396.47Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
LWD2_ARATH4.445e-3581.18WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
LWD1_ARATH7.582e-3580.00WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
DCAF7_DICDI7.113e-2568.67DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
DCAF7_MOUSE4.611e-2463.27DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN4.611e-2463.27DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
YBE8_SCHPO1.437e-1753.26Uncharacterized WD repeat-containing protein C17D1... [more]
YP247_YEAST1.138e-1457.35WD repeat-containing protein YPL247C OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionEST0315 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB274 similar to Ttg1-like protein (acc# AAF27919), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322193 ID=CB322193; Name=CB322193; organism=Citrus sinensis; type=EST; length=255bp
GGAACTTGTAGCATCGATACTACTTGCACTATCTGGGATATTGAAAAGGG
TGTTGTTGAAACTCAACTTATTGCTCATGACAAAGAGGTTTACGACATCT
GCTGGGGTGAAGCTAGGGTTTTTGCTTCAGTTTCTGCTGATGGGTCAGTG
AGAATTTTCGATTTGAGAGACAAAGAACATTCCACGATTATTTACGAGAG
CCCGCAACCCGACACCCCATTGCTTAGATTAGCTTGGAATAAGCAGGATT
TAAGG
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