CB322194

Overview
NameCB322194
Unique NameCB322194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12012 contig Csv1_Contig12012:640..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_NITWN (Thiamine biosynthesis protein thiC OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=thiC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR E+ARGRAIIPSN  H ELEPMI+GRNFLVK+NANIGNSAV SS+EEEV K+ WA
Sbjct:  184 FVREEIARGRAIIPSNINHAELEPMIIGRNFLVKINANIGNSAVTSSVEEEVDKMVWA 241          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SHEPC (Thiamine biosynthesis protein thiC OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=thiC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.136e-19
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVRAEVARGRAIIP N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  246 FVRAEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 304          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_NITHX (Thiamine biosynthesis protein thiC OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=thiC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.484e-19
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR E+ARGRAIIP+N  H ELEPMI+GRNFLVK+NANIGNSAV SS+EEEV K+ WA
Sbjct:  184 FVREEIARGRAIIPANINHAELEPMIIGRNFLVKINANIGNSAVTSSVEEEVDKMVWA 241          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_CORGL (Thiamine biosynthesis protein thiC OS=Corynebacterium glutamicum GN=thiC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.484e-19
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR+EVARGRAIIP+N  H E EPMI+GR FL K+NANIGNSAV SSIEEEV K+QWAT
Sbjct:  143 FVRSEVARGRAIIPNNVNHPESEPMIIGRKFLTKINANIGNSAVTSSIEEEVSKLQWAT 201          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_CORGB (Thiamine biosynthesis protein thiC OS=Corynebacterium glutamicum (strain R) GN=thiC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.484e-19
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR+EVARGRAIIP+N  H E EPMI+GR FL K+NANIGNSAV SSIEEEV K+QWAT
Sbjct:  143 FVRSEVARGRAIIPNNVNHPESEPMIIGRKFLTKINANIGNSAVTSSIEEEVSKLQWAT 201          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_COREF (Thiamine biosynthesis protein thiC OS=Corynebacterium efficiens GN=thiC PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.484e-19
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR+EVARGRAIIP+N  H E EPMI+GR FL K+NANIGNSAV SSIEEEV K+QWAT
Sbjct:  143 FVRSEVARGRAIIPNNVNHPESEPMIIGRKFLTKINANIGNSAVTSSIEEEVSKLQWAT 201          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_NITOC (Thiamine biosynthesis protein thiC OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=thiC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.938e-19
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = -3
Query:    7 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWA 180
            FVR+EVARGRAIIP+N  H ELEPMI+GRNFLVK+NANIGNSAV SSI EEV K+ WA
Sbjct:  192 FVRSEVARGRAIIPANINHTELEPMIIGRNFLVKINANIGNSAVTSSIAEEVDKMTWA 249          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_MAGSA (Thiamine biosynthesis protein thiC OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=thiC PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.938e-19
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVRAE+ARGRA++P+N  H E EPMI+GRNFL K+NANIGNSAVASS++EEV K+ WAT
Sbjct:  178 FVRAEIARGRAVLPANVNHPEAEPMIIGRNFLTKINANIGNSAVASSVDEEVEKMVWAT 236          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_TERTT (Thiamine biosynthesis protein thiC OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.531e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR+EVARGRAIIP+N  H ELEPMI+GRNFLVK+N NIGNSA+ SSIEEEV K+ W T
Sbjct:  194 FVRSEVARGRAIIPANINHPELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTWGT 252          
BLAST of CB322194 vs. ExPASy Swiss-Prot
Match: THIC_SHEDO (Thiamine biosynthesis protein thiC OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.531e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = -3
Query:    4 FVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT 180
            FVR+EVARGRAIIP N  H E EPMI+GRNFLVKVNANIGNSAV SSIEEEV K+ W+T
Sbjct:  198 FVRSEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWST 256          
The following BLAST results are available for this feature:
BLAST of CB322194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
THIC_NITWN6.660e-2079.31Thiamine biosynthesis protein thiC OS=Nitrobacter ... [more]
THIC_SHEPC1.136e-1981.36Thiamine biosynthesis protein thiC OS=Shewanella p... [more]
THIC_NITHX1.484e-1977.59Thiamine biosynthesis protein thiC OS=Nitrobacter ... [more]
THIC_CORGL1.484e-1977.97Thiamine biosynthesis protein thiC OS=Corynebacter... [more]
THIC_CORGB1.484e-1977.97Thiamine biosynthesis protein thiC OS=Corynebacter... [more]
THIC_COREF1.484e-1977.97Thiamine biosynthesis protein thiC OS=Corynebacter... [more]
THIC_NITOC1.938e-1979.31Thiamine biosynthesis protein thiC OS=Nitrosococcu... [more]
THIC_MAGSA1.938e-1972.88Thiamine biosynthesis protein thiC OS=Magnetospiri... [more]
THIC_TERTT2.531e-1976.27Thiamine biosynthesis protein thiC OS=Teredinibact... [more]
THIC_SHEDO2.531e-1979.66Thiamine biosynthesis protein thiC OS=Shewanella d... [more]

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Properties
Property NameValue
Genbank descriptionEST0316 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB275 similar to putative thiamine biosynthesis protein (acc# AAK26130), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322194 ID=CB322194; Name=CB322194; organism=Citrus sinensis; type=EST; length=182bp
CATGGTTGCCCATTGAACCTTGTAAACTTCTTCCTCAATAGAGCTAGCTA
CAGCAGAATTACCAATATTTGCATTAACTTTGACCAAAAAATTTCTTCCG
ACTATCATTGGTTCTAGTTCCAAGTGCTTCTTGTTGGAAGGAATGATTGC
TCGGCCACGAGCAACCTCTGCCCTCACAAATT
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