CB322195

Overview
NameCB322195
Unique NameCB322195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length371
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10775 contig Csv1_Contig10775:1505..1875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 9.898e-48
Identity = 91/123 (73.98%), Postives = 99/123 (80.49%), Query Frame = 2
Query:    2 QQQNSTALGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            QQQNSTA  MA+ILEAHPKV  V+YPGL SHPEH +A +QMT            D+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMSYWDL Q ERLKYGI DNLVRFSFGVEDFED+KAD
Sbjct:  433 QQQNSTAFRMAEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKAD 555          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.143e-22
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   20 ALGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            A+ +A+ LE HPKVKRV+YPGL SHP+H IA +QM             DL  T K ++  ++  +A S GG ES+++ PAIM++  + Q+ER K GI D  +R S G+E   DL+ D
Sbjct:  266 AMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRYFGGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLRHD 382          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.685e-20
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 2
Query:    2 QQQNSTALGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            +     A  +   LE HPKV+RV YPGL SHP+H I  +QM              +  +  F++ +K+  +A S GG ES+++ P++M++  +   ER K GI D L+R S G+ED  DL AD
Sbjct:  257 EAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLAD 379          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: METB_HELPJ (Cystathionine gamma-synthase OS=Helicobacter pylori J99 GN=metB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 2
Query:    2 QQQNSTALGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            +     AL +A+ LE HPKV+RV+YPGL +HP H +A  QM             D  A + F+++LK+  +  S GG ES+V  PA+M++  + +++R   GI D LVR S G+E  +DL  D
Sbjct:  250 EAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNHELAKAQMRGFSGMFSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPALMTHACIPKAQREAAGIRDGLVRLSVGIEHEQDLLED 371          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: CGL_PIG (Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.172e-18
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 2
Query:   23 LGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            + +A+ LE+HP V++V YPGL SHP+H +A +Q T             L     F+ +LK+  +A S GG ES+ + PAIM++  + +S+R   GI D L+R S G+ED +DL  D
Sbjct:  274 MAVAQFLESHPLVEKVIYPGLPSHPQHELAKRQCTGCPGMISFYIKGSLHHAETFLKSLKLFTLAESLGGYESLAELPAIMTHSSVPKSDREVLGIRDTLIRLSVGLEDKQDLMDD 389          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: CGL2_CAEEL (Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 2
Query:   20 ALGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            AL +AK LEA+ +++ V YP L SHP+H +  +Q              +L  +  F+ ALK+  +A S GG ES+ + P+IM++  +    R+  GI DNL+R S G+ED +DL AD
Sbjct:  264 ALAVAKYLEANDRIESVLYPALPSHPQHEVHEKQTKGMSGMISFYLKGELQESRAFLSALKVFTLAESLGGYESLAELPSIMTHASVPAETRIVLGITDNLIRISVGIEDLDDLVAD 380          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.378e-17
Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 2
Query:    2 QQQNSTALGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            +     AL +A+ LE HPKV+RV+YPGL +HP + +A +QM             D  A + F+++LK+  +  S GG ES+V  PA M++  + +++R   GI D LVR S G+E  +DL  D
Sbjct:  250 EAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLED 371          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: CGL_BOVIN (Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.056e-17
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 2
Query:   23 LGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            + +A+ LE++P+V++V YPGL SHP+H +A +Q T             L     F+  LK+  +A S GG ES+ + PAIM++  + +S+R   GI D L+R S G+ED +DL  D
Sbjct:  274 MAVAQFLESNPQVEKVIYPGLPSHPQHELAKRQCTGCPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDD 389          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.297e-17
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 2
Query:    2 QQQNSTALGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            Q  +++AL +A+ LE  P ++RV+Y GL SHP+H +A +Q +               A  +FIDA ++  I  + G  ++ +  PA  S+  LS  +R + GI D+L+R + G+ED +DLKAD
Sbjct:  273 QAHSASALALAEWLERQPGIERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKAD 395          
BLAST of CB322195 vs. ExPASy Swiss-Prot
Match: CGL_RAT (Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 2
Query:   23 LGMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTXXXXXXXXXXXXDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 370
            + +A+ LE++P+V++V YPGL SHP+H +A +Q T             L     F+  +K+  +A S GG ES+ + PAIM++  + + +R   GI D L+R S G+ED +DL  D
Sbjct:  273 MAVARFLESNPRVEKVIYPGLPSHPQHELAKRQCTGCPGMVSFYIKGTLQHAQVFLKNIKLFALAESLGGYESLAELPAIMTHASVPEKDRATLGISDTLIRLSVGLEDEKDLLED 388          
The following BLAST results are available for this feature:
BLAST of CB322195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
METB_ARATH9.898e-4873.98Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
METC_COXBU7.143e-2243.59Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
CGL_DICDI6.685e-2037.40Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
METB_HELPJ4.791e-1839.02Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
CGL_PIG8.172e-1839.66Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=... [more]
CGL2_CAEEL1.067e-1738.46Putative cystathionine gamma-lyase 2 OS=Caenorhabd... [more]
METB_HELPY2.378e-1738.21Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
CGL_BOVIN4.056e-1738.79Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=... [more]
METZ_PSEAE5.297e-1735.77O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
CGL_RAT9.036e-1737.07Cystathionine gamma-lyase OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0317 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB276 similar to cystathione gamma synthase chain D (acc# 1QGN_D), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322195 ID=CB322195; Name=CB322195; organism=Citrus sinensis; type=EST; length=371bp
ACAGCAACAAAATTCAACTGCGTTGGGGATGGCCAAGATTTTAGAGGCAC
ATCCAAAGGTGAAGCGCGTTCACTATCCAGGCTTGAAGAGTCATCCTGAG
CATCACATTGCCACACAGCAAATGACTGGTTTTGGTGGGGTAGTTAGTTT
TGAGGTTGGTGGAGACCTAACGGCCACCATAAAATTTATTGATGCCTTGA
AAATCCCATATATTGCTCCATCCTTCGGTGGCTGTGAGAGCATTGTTGAT
CAGCCAGCTATAATGTCGTATTGGGACCTTAGCCAATCGGAGAGGCTCAA
GTATGGGATTATGGATAACTTGGTTCGCTTTAGCTTTGGAGTGGAAGATT
TTGAAGATTTGAAGGCTGATG
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