CB322198

Overview
NameCB322198
Unique NameCB322198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length119
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_CITSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis GN=ndhD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.501e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_LACSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lactuca sativa GN=ndhD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.737e-15
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_GUIAB (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Guizotia abyssinica GN=ndhD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.737e-15
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_CERDE (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Ceratophyllum demersum GN=ndhD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.737e-15
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_TOBAC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nicotiana tabacum GN=ndhD PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MI+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_SOLTU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Solanum tuberosum GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MI+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_SOLLC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Solanum lycopersicum GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MI+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMII 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_PLAOC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Platanus occidentalis GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_NUPAD (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nuphar advena GN=ndhD PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGL+RINMELLPHAHSIFSPW MIV
Sbjct:  245 TCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIV 283          
BLAST of CB322198 vs. ExPASy Swiss-Prot
Match: NU4C_NICTO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nicotiana tomentosiformis GN=ndhD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIV 117
            TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPW MI+
Sbjct:  245 TCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMII 283          
The following BLAST results are available for this feature:
BLAST of CB322198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
NU4C_CITSI3.501e-16100.00NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_LACSA1.737e-1597.44NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_GUIAB1.737e-1597.44NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CERDE1.737e-1597.44NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_TOBAC2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_SOLTU2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_SOLLC2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_PLAOC2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_NUPAD2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_NICTO2.269e-1594.87NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionEST0322 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB283 similar to NADH dehydrogenase subunit 4 (acc# AAO26143), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322198 ID=CB322198; Name=CB322198; organism=Citrus sinensis; type=EST; length=119bp
ACTTGTATGCTTCTAGCCGGAATCTTATTAAAAATGGGAGCATATGGGTT
GATTCGAATCAATATGGAACTATTACCGCACGCTCATTCTATATTTTCCC
CCTGGTTCATGATAGTAGG
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