CB322206

Overview
NameCB322206
Unique NameCB322206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5749 contig Csv1_Contig5749:93..394. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.044e-28
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKHSNFSSFIRQLNIYGFRK+D DRWEF NDGFVR QK LL N+ RRKN Q SEQ K    S    +     + S LWKEV+ LK  K  L QEL+K+RQ
Sbjct:   64 FKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQ-----EKSGLWKEVDILKGDKQVLAQELIKVRQ 158          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.335e-26
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL---------VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+GF+R QKHLL  I RRK+ QG     S  QS++L         +  C ++    L +EVE LK  KN L QEL+KLRQ
Sbjct:   96 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQ 204          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKHSNFSSF+RQLN YGFRK+D DRWEF N+GF+R QKHLL  I RRK T G+ Q +  Q     V  C ++    + +E+E LK  KN L QEL++LRQ
Sbjct:   81 FKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQ 180          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQ----SEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+GF+R QKHLL +I RRK   G  Q     Q        V  C ++    L +EVE LK  KN L QEL++LRQ
Sbjct:   81 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQ 184          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.011e-23
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+GF+R +K LL +I RRK +   + ++  Q     V  C ++    + +EVE LK  KN L QEL++LRQ
Sbjct:   71 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQ 170          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.321e-23
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQG--SEQRKSLQQSEKLVEP---------CEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+GF+R QKHLL +I RRK   G   +Q++    +++ ++P         C ++    L +EVE LK  KN L QEL++LRQ
Sbjct:   85 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQ 195          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.321e-23
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQG--SEQRKSLQQSEKLVEP---------CEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+GF+R QKHLL +I RRK   G   +Q++    +++ ++P         C ++    L +EVE LK  KN L QEL++LRQ
Sbjct:   83 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQ 193          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.019e-23
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEK--LVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK++ DRWEF N+GF+R QKHLL NI RRK +  S Q +  Q SE+  L   C ++    L  E+++L+  K  L  EL++LRQ
Sbjct:  105 FKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQ 206          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.907e-22
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNTQ-GSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKH+NFSSF+RQLN YGFRK+D DRWEF N+GF+R QK +L +I RRK  Q    Q+  +Q S   V  C ++    L +EVE L+  KN L QEL++LRQ
Sbjct:   67 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS--VGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQ 165          
BLAST of CB322206 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.615e-21
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    3 FKHSNFSSFIRQLNIYGFRKIDTDRWEFVNDGFVRDQKHLLNNICRRKNT-QGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ 302
            FKHSNFSSFIRQLN YGFRK+D DRWEF N+GF+  QKHLL  I RR+N  Q   Q+ S          C +I +  + +E+E LK  KN L  E++KLRQ
Sbjct:   75 FKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGS--------GACIEIGYYGMEEELERLKRDKNVLMTEIVKLRQ 167          
The following BLAST results are available for this feature:
BLAST of CB322206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSFA8_ARATH1.044e-2863.00Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HFA1A_ARATH6.335e-2654.13Heat stress transcription factor A-1a OS=Arabidops... [more]
HSFA1_ORYSJ1.081e-2556.00Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA1D_ARATH2.038e-2453.85Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA1B_ARATH1.011e-2351.00Heat stress transcription factor A-1b OS=Arabidops... [more]
HSF8_SOLPE1.321e-2349.55Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC1.321e-2349.55Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA6B_ARATH5.019e-2351.96Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA1E_ARATH1.907e-2253.47Heat stress transcription factor A-1e OS=Arabidops... [more]
HSF30_SOLPE1.615e-2153.47Heat shock factor protein HSF30 OS=Solanum peruvia... [more]

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Properties
Property NameValue
Genbank descriptionEST0330 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB343 similar to putative heat shock transcription factor (acc# AAM19775), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322206 ID=CB322206; Name=CB322206; organism=Citrus sinensis; type=EST; length=302bp
ACTTCAAGCACAGTAACTTCTCCAGCTTCATCAGGCAACTCAATATCTAT
GGGTTTAGAAAAATTGACACAGACCGTTGGGAATTTGTAAATGATGGATT
CGTTAGAGATCAGAAGCATTTGTTGAACAATATTTGTAGAAGGAAAAATA
CTCAAGGGTCTGAGCAGCGAAAATCATTGCAGCAGTCAGAAAAGTTGGTT
GAACCATGTGAGAAAATTGACCATTCGGCACTGTGGAAGGAAGTTGAGAA
TTTGAAGGCTGGTAAAAATGCACTTACACAGGAGTTGCTGAAACTTAGGC
AG
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