CB322217

Overview
NameCB322217
Unique NameCB322217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11301 contig Csv1_Contig11301:113..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.054e-20
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW SPVAW LYG++T QVGD +S+V I    +  M++K  +++ + F  DF+PVV+++HI W+ +FLF FAY IK +NFQRR
Sbjct: 1374 YWASPVAWTLYGIITSQVGDRDSIVHITGVGD--MSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.210e-20
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW +PVAW LYGL+T QVGD +S+V I    +  + +K  +++ + F+ DF+PVV+++HI W+ +FLFVFAY IK +NFQRR
Sbjct: 1375 YWATPVAWTLYGLITSQVGDKDSMVHISGIGD--IDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.676e-16
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW +PV+W +YG++  Q  D + +V +P G +T M VK F+E N  FK DF+  V + H  ++ +F F+F Y IK +NFQ+R
Sbjct: 1374 YWANPVSWTIYGVIASQFADSDRVVTVP-GQSTTMVVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.564e-16
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW+ PVAW +YGL+  Q GD+E+ +++  G    +TVKQ+IED+Y F+ DF+  V+ + I +   F F+FA+ I+ +NFQ R
Sbjct: 1389 YWICPVAWTVYGLIVSQYGDVETRIQVL-GGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.785e-16
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW +PVAW LYGL+  Q GD E  V++ DG +  M VKQ +ED   +K DF+ V +IM + +   F  VFA+AIKA NFQRR
Sbjct: 1340 YWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVM-VKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.046e-15
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW SPVAW +YG+   QVGD    +E+  G   K+ V +F+++   +  DF+ VV   H+ W+ +F FVFAY IK +N+Q+R
Sbjct: 1381 YWASPVAWTIYGIFASQVGDRTDELELT-GETEKIQVNEFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.608e-15
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW  P+AW LYGLV  Q GDL+    + D N T   V+QF+  N+ FK DF+ VV+ + + +  VF F FA  IKA NFQRR
Sbjct: 1360 YWGCPIAWTLYGLVASQFGDLQD--PLTDQNQT---VEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.124e-14
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW+ PVAW +YGL+T Q GD+E+ + +  G    +TVKQ+I+D Y F+ D++  V+ + + +   F F+FA+ IK +NFQ R
Sbjct: 1362 YWICPVAWTIYGLITSQYGDVETPIALL-GGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.271e-14
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 3
Query:    6 WLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            W+ PVAW LYGLV  Q GD++ ++E         TV QF+ D + F  +F+ VV+++H+V+   F F+F++AI   NFQRR
Sbjct: 1375 WICPVAWTLYGLVASQFGDIQHVLE-----GDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of CB322217 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.272e-14
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    3 YWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 248
            YW +PVAW LYGLV  Q GD+++ +      +   TV+QF+   + FK DF+ VV+ +   ++ +F F FA+AIKA NFQRR
Sbjct: 1359 YWANPVAWTLYGLVASQFGDIQTKL------SDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
The following BLAST results are available for this feature:
BLAST of CB322217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
AB34G_ARATH3.054e-2051.22ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH5.210e-2051.22ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR5_ORYSJ2.676e-1642.68Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB36G_ARATH4.564e-1643.90ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB32G_ARATH7.785e-1651.22ABC transporter G family member 32 OS=Arabidopsis ... [more]
PDR2_NICPL5.046e-1542.68Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_NICPL8.608e-1548.78Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB35G_ARATH1.124e-1442.68ABC transporter G family member 35 OS=Arabidopsis ... [more]
PDR4_ORYSJ3.271e-1443.21Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR1_TOBAC4.272e-1445.12Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionEST0342 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB358 similar to ABC transporter (acc# AAM15320), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322217 ID=CB322217; Name=CB322217; organism=Citrus sinensis; type=EST; length=329bp
ACTACTGGCTTTCTCCGGTGGCTTGGAATCTGTATGGCCTTGTTACTTGT
CAAGTTGGTGACTTAGAGTCACTTGTGGAGATTCCTGATGGTAATAATAC
TAAAATGACAGTGAAGCAATTCATCGAAGATAATTATGATTTCAAGAAAG
ATTTCATTCCTGTCGTTAGTATCATGCACATTGTCTGGATGGCCGTGTTC
TTGTTTGTGTTTGCCTATGCCATCAAGGCCATCAACTTCCAAAGGAGATA
AACCAGCTCAAATCTTAAGAATGATAGACCTAAGTGAGCATGTGGGAAAC
AAAAGGTTACCACATTTTTTTTTCTTTTG
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