CB322220

Overview
NameCB322220
Unique NameCB322220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322220 vs. ExPASy Swiss-Prot
Match: AB7I_ARATH (Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.419e-30
Identity = 59/75 (78.67%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 TGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 225
            TGGKL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQLHKCIVAHS GQAVFDGNV+VNR
Sbjct:  304 TGGKLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSGQAVFDGNVRVNR 378
The following BLAST results are available for this feature:
BLAST of CB322220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB7I_ARATH8.419e-3078.67Protein ABCI7, chloroplastic OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionEST0345 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB361 similar to unknown Arabidopsis protein (acc# D86450), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322220 ID=CB322220; Name=CB322220; organism=Citrus sinensis; type=EST; length=546bp
ACTGGTGGAAAATTGAGCAGGCACAATGTCCATGTTCAACAATTAGGCCC
TGATACAGAGACAGAGTTATCTTCATTTCATTTGTTGGTCTCTGATCAAA
CACAAGATCTTCATAGTAGGCTACTGTTGGACCATCCACGAGGTTATTGT
CGACAGCTTCACAAGTGTATTGTGGCTCATTCGCTAGGACAAGCTGTTTT
TGATGGGAACGTAAAGGTTAACAGGTAACTGTGTCACATCCAATCATAAT
ACCTGGTAGCATTATTTGCATTAAATGCCATTATATGTCCCCGTTCAAAA
TCATCAGGTATACAAATCACATTGTTCCATTATCAGAGTCCCTTTTTTTC
TACGCAATAGTTCTAGACTACTAGTTTCTCCAACGATACAACATGTTGAA
AATTGATGCTAAATTAAATAGCTAGCGAAGTTGTAGAGGTGAAAAAAAAA
AATGTGTTGAATAGGCATGCATCTGGACTCTGAATTGATATATCTTTTGT
GCATGCAGATATGCACAGCAAACAGATGCTGGACAACTAACAAGAA
back to top