CB322221

Overview
NameCB322221
Unique NameCB322221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6254 contig Csv1_Contig6254:389..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322221 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.960e-15
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 2
Query:    5 NVKASDFFANMPTFASNNS-------------VNEARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKASSSNAVVN-PELNNNSQTV--------------------------PIARRASLHRFFEKRKDRAIARAP 313
            +VK ++ F   P+F+S++S                 + E  ++ +TI YAG+V VFND SAEKAKE++ LA+K ++++   N  ++ +N  T+                          PIARRASLHRF EKRKDR  ++AP
Sbjct:   83 DVKPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAP 225          
BLAST of CB322221 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.084e-13
Identity = 50/130 (38.46%), Postives = 67/130 (51.54%), Query Frame = 2
Query:   38 PTFASNNSVNE----ARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKASSSNAV-----VNPELNNN--SQTVP---------------------------IARRASLHRFFEKRKDRAIARAP 313
            P+ +S   V +    + ++ GSSQ+TI + GKV V+N+   +KAKEIM +A +A     +     +N E NNN  S  +P                           IARRASLHRFF KRKDRA+ARAP
Sbjct:   75 PSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVLPDLNEPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDRAVARAP 204          
BLAST of CB322221 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.554e-13
Identity = 52/108 (48.15%), Postives = 63/108 (58.33%), Query Frame = 2
Query:   80 EHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKAS-----SSNA----------VVNPELN------NNS--------QTVP-IARRASLHRFFEKRKDRAIARAP 313
            E G+SQ+TI + GKV VFN+   +KAKEIM +A +A+     S N+          VV P+LN      NN         Q V  IARRASLHRFF KRKDRA+ARAP
Sbjct:  101 ESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHMNLDKSNVVIPDLNEPTSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAP 208          
BLAST of CB322221 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.304e-12
Identity = 49/152 (32.24%), Postives = 68/152 (44.74%), Query Frame = 2
Query:    5 NVKASDFFANMPTFASNNS-------------VNEARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKASSSN-AVVNPELNNNSQT-----------------------------------VPIARRASLHRFFEKRKDRAIARAP 313
            ++K    F    +F+S++S                 + E  S+ +TI Y G+V VF+D SAEKAKE++ LA K S+ +      E+NNN                                      +PIARRASLHRF EKRKDR  ++AP
Sbjct:   76 DIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAP 227          
The following BLAST results are available for this feature:
BLAST of CB322221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TI10A_ARATH4.960e-1534.97Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH2.084e-1338.46Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
TI11B_ARATH3.554e-1348.15Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
TI10B_ARATH2.304e-1232.24Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionEST0346 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB362 similar to unknown Arabidopsis protein (acc# AAM65383), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322221 ID=CB322221; Name=CB322221; organism=Citrus sinensis; type=EST; length=313bp
ACTGAATGTGAAAGCCAGTGATTTCTTCGCAAATATGCCAACTTTTGCTT
CCAACAATTCCGTAAATGAAGCCAGAACGGAGCATGGAAGCTCTCAAATG
ACGATAATCTATGCCGGGAAAGTGTTCGTCTTCAACGACACTTCTGCGGA
GAAGGCAAAAGAAATCATGGCCTTAGCCACAAAAGCATCGAGCTCTAATG
CTGTTGTTAACCCGGAATTGAACAACAACTCTCAGACGGTGCCAATAGCA
AGAAGAGCTTCACTTCACCGTTTCTTTGAGAAAAGAAAAGACAGGGCTAT
AGCAAGAGCTCCG
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