CB322222

Overview
NameCB322222
Unique NameCB322222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.862e-20
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = -2
Query:  210 AGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 341
            AGQ+PG NPAIPG+F NMFPL +  QFGALP+MPVQAMTQQ  R
Sbjct:  176 AGQVPGTNPAIPGLFSNMFPLAS-SQFGALPMMPVQAMTQQATR 218          

HSP 2 Score: 47.3654 bits (111), Expect = 8.862e-20
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -3
Query:   68 QATRHARRVYVGGLPPTANEQ 130
            QATRHARRVYVGGLPPTANEQ
Sbjct:  215 QATRHARRVYVGGLPPTANEQ 235          
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.152e-19
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = -2
Query:  210 AGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 341
            AGQ+PG NP IPGMFPNMFPL +G QFGALPVMP+QAMTQQ  R
Sbjct:  194 AGQVPGTNPPIPGMFPNMFPLASG-QFGALPVMPIQAMTQQATR 236          

HSP 2 Score: 41.5874 bits (96), Expect = 1.152e-19
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = -3
Query:   68 QATRHARRVYVGGLPPTANEQ 130
            QATRHARRVYVGGLP  ANEQ
Sbjct:  233 QATRHARRVYVGGLPAHANEQ 253          
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 5.915e-18
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = -2
Query:  210 VLICICLIFAGQIPGA--NPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 368
            +L    +  AGQ+P       IPGMF NMFP+V GQQ GALPV+PVQAMTQQ  R
Sbjct:  198 MLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATR 252          

HSP 2 Score: 47.3654 bits (111), Expect = 5.915e-18
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -3
Query:   68 QATRHARRVYVGGLPPTANEQ 130
            QATRHARRVYVGGLPPTANEQ
Sbjct:  249 QATRHARRVYVGGLPPTANEQ 269          
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 6.278e-17
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -2
Query:  210 GQIPGANPAIPG--MFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 338
            GQ+P A P +PG  MFPNMFPL TGQ FG L +MP+QAMTQQ  R
Sbjct:  192 GQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATR 236          

HSP 2 Score: 44.2838 bits (103), Expect = 6.278e-17
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = -3
Query:   68 QATRHARRVYVGGLPPTANEQ 130
            QATRHARRVYVGGL PTANEQ
Sbjct:  233 QATRHARRVYVGGLSPTANEQ 253          
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 1.790e-11
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -3
Query:   68 QATRHARRVYVGGLPPTANEQ 130
            QATRHARRVYVGGLPPTANEQ
Sbjct:  208 QATRHARRVYVGGLPPTANEQ 228          

HSP 2 Score: 41.9726 bits (97), Expect = 1.790e-11
Identity = 25/42 (59.52%), Postives = 27/42 (64.29%), Query Frame = -2
Query:  210 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 335
            Q PG   AIPGMFPNM P+  G QF  L + P QAMTQQ  R
Sbjct:  174 QFPGT--AIPGMFPNMLPMGVG-QFNPLVIQP-QAMTQQATR 211          
The following BLAST results are available for this feature:
BLAST of CB322222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U2A2A_NICPL8.862e-2075.00Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_NICPL1.152e-1979.55Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2B_ARATH5.915e-1858.18Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2A_ARATH6.278e-1766.67Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2B_ORYSJ1.790e-11100.00Splicing factor U2af large subunit B OS=Oryza sati... [more]
back to top
Properties
Property NameValue
Genbank descriptionEST0347 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB363 similar to U2 snRNP auxillary factor, large subunit (acc# CAA77136), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322222 ID=CB322222; Name=CB322222; organism=Citrus sinensis; type=EST; length=615bp
TCATAAATAGTCGGTGTGAAGAATATGGTAAAACAAAATGGCAATGAAAT
TTTGGTTGTGTCTAAACCTGTTCATTTGCTGTAGGGGGGAGTCCTCCAAC
ATAGACACGGCGGGCATGCCTAGTAGCCTGAACGCAGATTTAAAACCAGA
GAGAGATGTTAATAGATCTAAAAATACTTTTATAAAAATAACTACAATGC
ATGTCTGATTCTGCCAACCTGCTGAGTCATTGCCTGAACTGGCATAACAG
GAAGAGCACCAAACTGCTGACCAGTCACCAAAGGAAACATGTTCGGAAAC
ATTCCAGGGATTGCCGGATTAGCCCCAGGAATTTGACCTGCAAAGATCAA
GCAGATACATATTAGAACACAATTATGAATGATCTCTCAATTTACTGCAT
TTAAGATACTAAAAAAGACTGCCACAGCCACGTTTTCCCAGCAAACCCAT
CAAATTAAACATGACCTAACCCCTCAATATTTTTACCAATAACGATCAAA
GGAATACATCATATACAAGTTTTGGAGGAAATATTTGCAAGACTACCAAA
AATGGCAATAGTTTCCGGTTGAAGACGAAGAACACCCATCAAACCAGTGC
AATGATTCCTCCTTG
back to top