CB322222
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.862e-20 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = -2 Query: 210 AGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 341 AGQ+PG NPAIPG+F NMFPL + QFGALP+MPVQAMTQQ R Sbjct: 176 AGQVPGTNPAIPGLFSNMFPLAS-SQFGALPMMPVQAMTQQATR 218 HSP 2 Score: 47.3654 bits (111), Expect = 8.862e-20 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -3 Query: 68 QATRHARRVYVGGLPPTANEQ 130 QATRHARRVYVGGLPPTANEQ Sbjct: 215 QATRHARRVYVGGLPPTANEQ 235
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.152e-19 Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = -2 Query: 210 AGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 341 AGQ+PG NP IPGMFPNMFPL +G QFGALPVMP+QAMTQQ R Sbjct: 194 AGQVPGTNPPIPGMFPNMFPLASG-QFGALPVMPIQAMTQQATR 236 HSP 2 Score: 41.5874 bits (96), Expect = 1.152e-19 Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = -3 Query: 68 QATRHARRVYVGGLPPTANEQ 130 QATRHARRVYVGGLP ANEQ Sbjct: 233 QATRHARRVYVGGLPAHANEQ 253
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 63.929 bits (154), Expect = 5.915e-18 Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = -2 Query: 210 VLICICLIFAGQIPGA--NPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 368 +L + AGQ+P IPGMF NMFP+V GQQ GALPV+PVQAMTQQ R Sbjct: 198 MLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATR 252 HSP 2 Score: 47.3654 bits (111), Expect = 5.915e-18 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -3 Query: 68 QATRHARRVYVGGLPPTANEQ 130 QATRHARRVYVGGLPPTANEQ Sbjct: 249 QATRHARRVYVGGLPPTANEQ 269
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 63.5438 bits (153), Expect = 6.278e-17 Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -2 Query: 210 GQIPGANPAIPG--MFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 338 GQ+P A P +PG MFPNMFPL TGQ FG L +MP+QAMTQQ R Sbjct: 192 GQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATR 236 HSP 2 Score: 44.2838 bits (103), Expect = 6.278e-17 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = -3 Query: 68 QATRHARRVYVGGLPPTANEQ 130 QATRHARRVYVGGL PTANEQ Sbjct: 233 QATRHARRVYVGGLSPTANEQ 253
BLAST of CB322222 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 47.3654 bits (111), Expect = 1.790e-11 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -3 Query: 68 QATRHARRVYVGGLPPTANEQ 130 QATRHARRVYVGGLPPTANEQ Sbjct: 208 QATRHARRVYVGGLPPTANEQ 228 HSP 2 Score: 41.9726 bits (97), Expect = 1.790e-11 Identity = 25/42 (59.52%), Postives = 27/42 (64.29%), Query Frame = -2 Query: 210 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQVGR 335 Q PG AIPGMFPNM P+ G QF L + P QAMTQQ R Sbjct: 174 QFPGT--AIPGMFPNMLPMGVG-QFNPLVIQP-QAMTQQATR 211 The following BLAST results are available for this feature:
BLAST of CB322222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB322222 ID=CB322222; Name=CB322222; organism=Citrus sinensis; type=EST; length=615bpback to top |