CB417317

Overview
NameCB417317
Unique NameCB417317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YKWIL RN+  L KG +G+    LNI++ELKKCCNH +L +  D+    +   N    L+ +I SSGKL++LDKLL+RL E  +RVLIFSQMVRMLDILAEY+ Y+ F FQRLDG
Sbjct:  724 YKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDN----NEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDG 834          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YKWIL RN+  L KG +G+    LNI++ELKKCCNH +L +  D+    +   N    L+ +I SSGKL++LDKLL+RL E  +RVLIFSQMVRMLDILAEY+ Y+ F FQRLDG
Sbjct:  726 YKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDN----NEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDG 836          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.867e-30
Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YKWIL RN+  L KG +G+    LNI++ELKKCCNH +L +  D     +   N    L+ +I SSGKL++LDKLL+RL E  +RVLIFSQMVRMLDILAEY+ Y+ F FQRLDG
Sbjct:  722 YKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDD----NEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDG 832          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: CHD1_BOMMO (Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.439e-30
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YKWIL +N+  L KGV+G+  + +NIV+ELKKCCNH  L +  D  +    S+  S  +E+++  SGKL++LDKLL RL ET HRVLIFSQMVRMLDILAEY+  + F FQRLDG
Sbjct:  450 YKWILTKNYSALRKGVKGSINTFINIVIELKKCCNHALLTKPED--FESRASLATSDAVEKLLRGSGKLLLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQRRHFPFQRLDG 562          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.064e-29
Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YKWIL +NF  L KG RG+  + LNIV+ELKKCCNH  L   ++    G   +     L+ ++  SGKLV+LDKLL RL ET HRVLIFSQMVRMLD+LA+Y+  + F FQRLDG
Sbjct:  773 YKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMG---LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDG 884          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 66/115 (57.39%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YKWIL RN+  L KG RG+    LNIV+ELKKCCNH +L +  +     +   N    L  +I SSGKL++LDKLL RL E  +RVLIFSQMVRMLDILAEY++ K + FQRLDG
Sbjct:  729 YKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEE----NERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDG 839          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.479e-27
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGY---GGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YK IL +N+  L  G +G   SLLNI+ ELKK  NHP+LF++A+       GD  +   + L  +I+SSGK+V+LD+LL RL +  HRVLIFSQMVRMLDIL +Y+S KG  FQRLDG
Sbjct:  626 YKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDG 743          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.644e-26
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVR-GNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSK----LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YK IL RN+  L + +  G+Q+SLLNIVVELKK  NHP+LF+  +  +     IN   +    L+ +I++SGK+V+LDKLL RL    HRVLIFSQMVRMLDIL +Y+S +G+  QRLDG
Sbjct:  621 YKNILTRNYRVLTQSISSGSQISLLNIVVELKKASNHPYLFDGVEESWM--QKINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDG 738          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.215e-26
Identity = 57/115 (49.57%), Postives = 81/115 (70.43%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YK+IL RNF  L+    GNQVSLLNI+++LKKCCNHP+LF  A          N S     ++ SSGKL++L K+L +L +  HRVLIFSQM +MLD+L +++ Y+G++++R+DG
Sbjct:  960 YKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVA--AVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 1072          
BLAST of CB417317 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.060e-25
Identity = 64/116 (55.17%), Postives = 78/116 (67.24%), Query Frame = 3
Query:    3 YKWILERNFHDLDKGVRGN-QVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG 347
            YK IL +N+  L     G  Q+SLLNIVVELKK  NHP+LF  A   +     +     L  II++SGK+V+LDKLL RL    HRVLIFSQMVRML+IL EYMS +G+ +QRLDG
Sbjct:  637 YKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDG 752          
The following BLAST results are available for this feature:
BLAST of CB417317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CHD1_MOUSE1.095e-3057.39Chromodomain-helicase-DNA-binding protein 1 OS=Mus... [more]
CHD1_HUMAN1.095e-3057.39Chromodomain-helicase-DNA-binding protein 1 OS=Hom... [more]
CHD1_CHICK1.867e-3057.39Chromodomain-helicase-DNA-binding protein 1 OS=Gal... [more]
CHD1_BOMMO2.439e-3057.39Chromodomain-helicase-DNA-binding protein 1 OS=Bom... [more]
CHD1_DROME2.064e-2956.52Chromodomain-helicase-DNA-binding protein 1 OS=Dro... [more]
CHD2_HUMAN1.338e-2857.39Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
CHD1_YEAST1.479e-2754.24Chromo domain-containing protein 1 OS=Saccharomyce... [more]
HRP3_SCHPO3.644e-2653.33Chromodomain helicase hrp3 OS=Schizosaccharomyces ... [more]
CHD5_HUMAN6.215e-2649.57Chromodomain-helicase-DNA-binding protein 5 OS=Hom... [more]
HRP1_SCHPO1.060e-2555.17Chromodomain helicase hrp1 OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionEST0393 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P038 similar to putative chromodomain-helicase-DNA-binding protein (acc# NP_178970), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417317 ID=CB417317; Name=CB417317; organism=Citrus sinensis; type=EST; length=349bp
ACTACAAGTGGATTTTGGAACGCAACTTCCACGATTTGGACAAAGGAGTT
CGTGGGAATCAAGTTTCACTTCTGAATATTGTGGTAGAGTTAAAGAAATG
TTGCAACCATCCCTTCCTTTTTGAGAGTGCTGACCATGGTTATGGTGGGG
ACACCAGCATCAATGATAGCAGCAAACTGGAGAGAATTATTTTGAGCAGT
GGGAAGCTAGTGATACTGGACAAGCTACTTGTGAGGTTGCATGAGACAAA
ACATCGTGTTCTGATCTTTTCTCAGATGGTTAGAATGTTGGATATACTAG
CTGAGTATATGTCGTATAAAGGTTTCCAGTTTCAAAGGCTTGATGGTAG
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