CB417323 | Citrus Genome Database

Overview


Name	CB417323
Unique Name	CB417323
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	337

Libraries


Library Name	Type
Mature peel (flavedo) cDNA subtraction library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_VITVI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Vitis vinifera GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_MORIN (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Morus indica GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_MANES (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Manihot esculenta GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_GOSHI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Gossypium hirsutum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_GOSBA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Gossypium barbadense GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_CUCSA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C2_CITSI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Citrus sinensis GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_VITVI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Vitis vinifera GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_MORIN (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Morus indica GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

[Close]

BLAST of CB417323 vs. ExPASy Swiss-Prot
Match: NU2C1_MANES (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Manihot esculenta GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.709e-52
Identity = 100/112 (89.29%), Postives = 100/112 (89.29%), Query Frame = 2

Query:    2 QNENFILDSTRIFMKAFHLLLFDGSFIFPECXXXXXXXXXXXXDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 337
            QNENFILDSTRIFMKAFHLLLFDGSFIFPEC            DSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE
Sbjct:    6 QNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVE 117

The following BLAST results are available for this feature:

BLAST of CB417323 vs. ExPASy Swiss-Prot

BLAST of CB417323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
NU2C2_VITVI	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_MORIN	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_MANES	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_GOSHI	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_GOSBA	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_CUCSA	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C2_CITSI	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 B, chloro...	[more]
NU2C1_VITVI	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 A, chloro...	[more]
NU2C1_MORIN	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 A, chloro...	[more]
NU2C1_MANES	8.709e-52	89.29	NAD(P)H-quinone oxidoreductase subunit 2 A, chloro...	[more]

Pages

Properties


Property Name	Value
Genbank description	EST0400 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P067 similar to NADH dehydrogenase subunit B(acc# AAK17929), mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB417323 ID=CB417323; Name=CB417323; organism=Citrus sinensis; type=EST; length=337bp
ACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCT
TTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCNTA
ATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAA
AGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCA
TAACGGCCCTATTGTTCCGCTGGAGAGAAGAACCTATGATTAGCTTTTCG
GGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTT
ACTATGTTCAACTCTATGTATTCCTCTATCCGTGGAG