CB417326

Overview
NameCB417326
Unique NameCB417326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.632e-48
Identity = 86/109 (78.90%), Postives = 99/109 (90.83%), Query Frame = 3
Query:   63 YRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            YRE+++EF+DVGLMTGDVT++P ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP  +  VFLSAT+ NA QFAEWICHLHKQPCHV+
Sbjct:  197 YREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI 305          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 2.632e-48
Identity = 86/109 (78.90%), Postives = 99/109 (90.83%), Query Frame = 3
Query:   63 YRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            YRE+++EF+DVGLMTGDVT++P ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP  +  VFLSAT+ NA QFAEWICHLHKQPCHV+
Sbjct:  199 YREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI 307          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: MTR4_YEAST (ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae GN=MTR4 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.724e-45
Identity = 80/109 (73.39%), Postives = 96/109 (88.07%), Query Frame = 3
Query:   63 YRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            YREL  EF DVGLMTGD+T++P+A CLVMTTEILR MLYRGSEV++EVAWVIFDE+HYM+D+ERGVVWEE+II LP  ++ VFLSAT+ NA +FAEWIC +H QPCH+V
Sbjct:  209 YRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIV 317          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: YDVG_SCHPO (Uncharacterized helicase C6F12.16c OS=Schizosaccharomyces pombe GN=SPAC6F12.16c PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.306e-44
Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 3
Query:   63 YRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            YREL  EF DVGLMTGDVT++P+A+CLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D+ERGVVWEE+II LP     VFLSAT+ NA QFAEWI  +H+QPCHVV
Sbjct:  258 YRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVV 366          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: YE02_SCHPO (Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe GN=SPAC17H9.02 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.952e-43
Identity = 76/109 (69.72%), Postives = 95/109 (87.16%), Query Frame = 3
Query:   63 YRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            YREL  EF DVGLMTGDV+++P+ASCL+MTTEILR MLY+ SE++ E+AWVIFDE+HYM+D++RGVVWEE++I LP AI+ +FLSAT+ NA QFA WI  +HKQPCHVV
Sbjct:  185 YRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVV 293          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: MTR4_CAEEL (mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.280e-42
Identity = 77/109 (70.64%), Postives = 94/109 (86.24%), Query Frame = 3
Query:   63 YRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            YREL +EFKDVGLMTGDVTL+P+ASCLVMTTEILR MLYRGSE++KEV WV++DEIHYM+D+ERGVVWEE+II +   IK  FLSAT+ NA QFA+W+  + +QP +VV
Sbjct:  185 YRELEEEFKDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVV 293          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: SKIV2_HUMAN (Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.550e-32
Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 3
Query:   63 YRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            +R+    F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+HY+ D ERGVVWEE +I LP  + ++ LSAT+ NA +FA+WI  L ++  +V+
Sbjct:  370 FRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVI 478          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: YJV3_SCHPO (Uncharacterized helicase C550.03c OS=Schizosaccharomyces pombe GN=SPCC550.03c PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.924e-31
Identity = 57/109 (52.29%), Postives = 84/109 (77.06%), Query Frame = 3
Query:   63 YRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            +R+   +F+DVG++TGDV ++P  SCL+MTTEILR MLYRG++++++V +VIFDE+HY+ D ERGVVWEE II LPP + ++ LSAT+ N  +FA W+    K+  +V+
Sbjct:  340 FRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVI 448          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: SKI2_YEAST (Antiviral helicase SKI2 OS=Saccharomyces cerevisiae GN=SKI2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.737e-29
Identity = 57/111 (51.35%), Postives = 85/111 (76.58%), Query Frame = 3
Query:   63 YRELHQEFKDV--GLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 389
            +R+  + F DV  GL+TGDV ++P+A+CL+MTTEILR MLYRG++++++V +VIFDE+HY+ D++RGVVWEE II LP  +K + LSAT+ N  +FA WI    ++  +V+
Sbjct:  389 FRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVI 499          
BLAST of CB417326 vs. ExPASy Swiss-Prot
Match: HELY_MYCTU (Probable helicase helY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21
Identity = 45/88 (51.14%), Postives = 67/88 (76.14%), Query Frame = 3
Query:   93 VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 356
            +GL+TGD++++ NA  +VMTTE+LR MLY  S  L+ +++V+ DE+H++ DR RG VWEE I+ LP  +++V LSAT+SNA +F  WI
Sbjct:   89 IGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWI 176          
The following BLAST results are available for this feature:
BLAST of CB417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SK2L2_MOUSE2.632e-4878.90Superkiller viralicidic activity 2-like 2 OS=Mus m... [more]
SK2L2_HUMAN2.632e-4878.90Superkiller viralicidic activity 2-like 2 OS=Homo ... [more]
MTR4_YEAST2.724e-4573.39ATP-dependent RNA helicase DOB1 OS=Saccharomyces c... [more]
YDVG_SCHPO2.306e-4476.15Uncharacterized helicase C6F12.16c OS=Schizosaccha... [more]
YE02_SCHPO1.952e-4369.72Uncharacterized helicase C17H9.02 OS=Schizosacchar... [more]
MTR4_CAEEL6.280e-4270.64mRNA transport homolog 4 OS=Caenorhabditis elegans... [more]
SKIV2_HUMAN1.550e-3255.96Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2[more]
YJV3_SCHPO2.924e-3152.29Uncharacterized helicase C550.03c OS=Schizosacchar... [more]
SKI2_YEAST2.737e-2951.35Antiviral helicase SKI2 OS=Saccharomyces cerevisia... [more]
HELY_MYCTU3.583e-2151.14Probable helicase helY OS=Mycobacterium tuberculos... [more]

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Properties
Property NameValue
Genbank descriptionEST0403 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P073 similar to putative DExH-box helicase (acc# AAL11446), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417326 ID=CB417326; Name=CB417326; organism=Citrus sinensis; type=EST; length=389bp
CCAATGCCACACAGTTTGCCGAGTGGATTTGTCATTTGCACAAACAGCCT
TGCCATGTGGTGTACAGGGAGTTACATCAAGAGTTTAAAGATGTTGGATT
GATGACTGGTGATGTTACTCTCTCGCCTAATGCTAGTTGTTTGGTCATGA
CAACAGAAATTCTACGAGGAATGCTTTATCGGGGGTCGGAGGTCTTGAAG
GAAGTTGCTTGGGTTATTTTTGATGAAATTCATTACATGAAAGATAGAGA
AAGAGGGGTTGTTTGGGAGGAGAGTATTATATTTTTACCGCCAGCTATTA
AGATGGTTTTTCTTTCTGCGACAATGTCCAATGCCACACAGTTTGCCGAG
TGGATTTGTCATTTGCACAAACAGCCTTGCCATGTGGTG
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