CB417334

Overview
NameCB417334
Unique NameCB417334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.982e-55
Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 1
Query:   37 MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MS+IPS FG RRS+VFDPFSLDVWD      FP     E SAFVNTRVDWKETPEAHVF+AD+PG           DDRVLQISG+R +EKED+NDTWHRVERSSG F RRFRLPEN +V+Q+KASMENGVLTVTVPK EE KK +V+A++ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 153          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.498e-55
Identity = 107/159 (67.30%), Postives = 123/159 (77.36%), Query Frame = 1
Query:   37 MSMIPSFFGKRRSSVFDPFSLDVWD---------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MS+IPSFFG RRS+VFDPFSLDVWD          + S+ FP+E SAFV+TRVDWKETPEAHVFKADLPG           DDRVLQISG+R +EKED+ND WHR+ERSSG F RRFRLPEN ++DQ+KA+MENGVLTVTVPK EE KK  V+ + ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK-EEVKKPEVKTIDISG 158          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.498e-55
Identity = 109/159 (68.55%), Postives = 126/159 (79.25%), Query Frame = 1
Query:   37 MSMIPSFFGKRRSSVFDPFSLDVWD------FSSSS---QFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MS+IPSFF  RRS+VFDPFSLDVWD      FS+SS    FP+E  AFV+TRVDWKETPEAHVFKADLPG           DDRVLQISG+R +EKED+ND WHRVERSSG F RRFRLPEN ++D++KASMENGVLTVTVPK EE KK+ V++++ISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPK-EEIKKAEVKSIEISG 158          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.110e-54
Identity = 109/154 (70.78%), Postives = 120/154 (77.92%), Query Frame = 1
Query:   37 MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MS+IPSFFG RRSSVFDPFSLDVWD      FP     E SAFV+TRVDWKETPEAHVFKAD+PG           D RVLQISG+R +EKED+NDTWHRVERSSG   RRFRLPEN +VDQ+KASMENGVLTVTVPK EE KK +V+A+ ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPK-EEIKKPDVKAIDISG 153          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.450e-54
Identity = 108/162 (66.67%), Postives = 128/162 (79.01%), Query Frame = 1
Query:   37 MSMIPSFFGKRRSSVFDPFSLDVWD----------FSSSS--QFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MS+IP+FFG RR++VFDPFSLDVWD           SS+S  +F +E SAFV+TRVDWKETPEAHVFKAD+PG           DD+VLQISG+R +EKED+NDTWHRVERSSG F RRFRLPEN +V+Q+KASMENGVLTVTVPK EE KK +V+A++ISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 161          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.508e-54
Identity = 105/155 (67.74%), Postives = 123/155 (79.35%), Query Frame = 1
Query:   37 MSMIPSFFGKRRSSVFDPFSLDVWD-----FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MS+IP FFG RRS+VFDPFSLD+WD        +S    E SAFV+TRVDWKETPEAHVFKAD+PG           DDRVLQISG+R +EKED+NDTWHRVERSSG F+RRFRLPEN +V+++KASMENGVLTVTVPK EE KK +V+A++ISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 154          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.314e-52
Identity = 104/154 (67.53%), Postives = 124/154 (80.52%), Query Frame = 1
Query:   37 MSMIPSFFGK-RRSSVFDPFSLDVWD---FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MSMIPSFF   RRS++FDPFSLDVWD     +SS   +E SA VN RVDW+ETPEAHVFKADLPG           +D VL+ISG+R +EKED+NDTWHRVERSSG F+RRFRLPENV++DQ+KA+MENGVLTVTVPKA E KK++V+++QISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKA-ETKKADVKSIQISG 153          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.959e-51
Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = 1
Query:   37 MSMIPSFFG--KRRSSVFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEA-KKSNVRAVQISG 486
            MS+IPSFFG  +R +S+FDPFSLDVWD     QFP     ETSA  N RVDWKET EAHVFKADLPG           DD VL+ISG+R +EKE++ DTWHRVERSSG FSR+F+LPENV++DQ+KASMENGVLTVTVPK EEA KK+ V+++ ISG
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.364e-51
Identity = 101/155 (65.16%), Postives = 118/155 (76.13%), Query Frame = 1
Query:   37 MSMIPSFFGKRRSSVFDPFSLDVWD-----FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MS+IPS FG  RS+VFDPFSLD+WD        +S    E SAFVNTRVDWKET EAHV KAD+PG           DDRVLQISG+R +EKED+NDTWHRV+RSSG F RRFRLPEN +V+Q+KA MENGVLTVT+PK EE KKS+V+ ++ISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPK-EEVKKSDVKPIEISG 154          
BLAST of CB417334 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 101/158 (63.92%), Postives = 121/158 (76.58%), Query Frame = 1
Query:   37 MSMIPSFFGKRRSSVFDPFSLDVWD--------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 486
            MS+IPSFFG RRS+VFDPFSLDVWD         SS+S+F +ET+AFVNT +DWKETP+AHVFKADLPG           + +VLQISG+R  EKE++ND WHRVERSSG F RRFRLPEN +VD++KA+M NGV+TVTVPK  E KK  V+A+ ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKV-EIKKPEVKAIDISG 157          
The following BLAST results are available for this feature:
BLAST of CB417334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HSP13_SOYBN4.982e-5570.1317.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA8.498e-5567.3018.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_PEA8.498e-5568.5518.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN1.110e-5470.7817.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP16_SOYBN1.450e-5466.6718.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN5.508e-5467.7417.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17B_ARATH2.314e-5267.5317.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS178_ARATH1.959e-5165.6117.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP15_SOYBN4.364e-5165.1617.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA5.700e-5163.9217.8 kDa class I heat shock protein OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionEST0411 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P083 similar to 17.5 kDa heat shock protein, class I (acc# P04793), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417334 ID=CB417334; Name=CB417334; organism=Citrus sinensis; type=EST; length=660bp
ACTCGTGGGTTGTCAGCTTCTAAATTCTGATCGAAAATGTCGATGATTCC
AAGCTTCTTCGGAAAACGCCGCAGCAGTGTCTTCGATCCATTCTCTCTTG
ACGTCTGGGATTTCTCTTCCTCATCTCAGTTCCCGCAAGAGACCTCGGCT
TTCGTCAACACCCGCGTCGACTGGAAGGAAACCCCGGAAGCCCACGTGTT
CAAGGCCGATCTGCCGGGGGTGAAGAAAGAGGAAGTGAAGGTCGAGGTCG
AGGATGACAGGGTGCTTCAGATAAGCGGGCAGAGGAAGATCGAGAAGGAA
GACAGGAACGACACGTGGCATCGCGTGGAGCGCAGCAGTGGAGCGTTCTC
GCGGAGGTTCAGGCTACCGGAGAATGTGGAGGTGGACCAGATTAAGGCCT
CAATGGAGAATGGTGTGCTCACTGTTACCGTTCCTAAAGCGGAGGAGGCC
AAGAAATCCAATGTCAGGGCTGTTCAAATTTCTGGCTGAATTCTCCTCCC
TCCTGATAATGAGGCTTTATTTGTTAATAATGATGATGAGGTCGCCTTCT
GGTTTTAGGGTTTAATGTGTGAATAAAATCTTATATTGCAAAGTAAAGTG
TCTTTTTCTTAATATAGGAAACAAACTAACGTAACACTTGGCTTTAATAA
TATCAAAAAA
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