CB417335

Overview
NameCB417335
Unique NameCB417335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12212 contig Csv1_Contig12212:963..1666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB417335 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = -1 
Query:  501 SGGNFSSVNETIWEDFMADDLIAGD--PEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYL 695
            +G +   V + IWE+ +++DLI+GD   EEVVV +Q E +VE+EDLV    +WGEELQDLVDQ+G+L
Sbjct:  285 NGTDMEPVADDIWEELLSEDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWGEELQDLVDQLGFL 351
The following BLAST results are available for this feature:
BLAST of CB417335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HSF30_SOLPE4.085e-1353.73Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
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Properties
Property NameValue
Genbank descriptionEST0413 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P085 similar to heat shock transcription factor (acc# P41152), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417335 ID=CB417335; Name=CB417335; organism=Citrus sinensis; type=EST; length=704bp
CACTATAAAATTGTGGAATTTCTCATTAATCCCAAAAGAAGTATTCAGCT
ATAGTAAAATCAAATTAGTCTGCACAAGCCCTTTGGTATTTACATATCTG
TAATCTGACAGCTGATATAAACACAAGAACAAATATAATGGACAAGAAAC
TGCAAAAGTCCAGAGTGCAAGCAGATTAGGCAGCTGAACTTTGAGCATAT
CTCTGAAATCAATCACGGGTTGAAACTCCTCCTTTCTTTTGGAGTCCGCC
CGCAACATGTGGCAAGAAAATATAAAACATTAAAGTGGTGCAAAGGATCA
AAAAGGGAAACACTAGACATTACAAGCAAAAAATCGAGACTCTATTATCA
CTTAAGGATACAGTAGAACAGGAACAAATATCGTTGGCCTCTTTGCAACT
TCGCGACTTCCAGCACTACAGAAACAGGAATGAAGTTGCAGAGACCAACT
CAGCCTAGGGAAGTCTTTCAACAATTCTGTGCAGCAATAGTTTGTCACCT
GAGATAACCCATCTGATCTACTAGGTCTTGCAATTCCTCACCCCAATCTG
TAGGTGTTGCAACCAAATCCTCCAATTCCACCTCAGCCTCTGACTGATCC
TTCACCACCACTTCTTCCGGATCGCCGGCAATCAGATCGTCAGCCATAAA
ATCCTCCCATATTGTCTCATTGACACTACTGAAATTGCCACCACTTGGGG
CAGG
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