CB417338

Overview
NameCB417338
Unique NameCB417338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: PIRL_SOLLC (Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 8.047e-53
Identity = 97/141 (68.79%), Postives = 116/141 (82.27%), Query Frame = 2
Query:    2 QNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQ 424
            Q GLQLWINLSS DKMIEPRYQE+  ++I +AE DGV V I+AGESMG +S V+TRTPTM+LDFTLKP ++ HQ IPETWNAF+Y +EGEG FG+ +S+   AH+ LVL  G+GLS WN+SSK LRFVLI GQP+NEPVVQ
Sbjct:  116 QKGLQLWINLSSKDKMIEPRYQELLHQDIPKAEKDGVSVTILAGESMGKKSQVFTRTPTMYLDFTLKPGSEHHQPIPETWNAFLYIVEGEGAFGSSDSTTTPAHHCLVLGPGEGLSVWNKSSKPLRFVLIGGQPINEPVVQ 256          
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: PRN1_ARATH (Pirin-1 OS=Arabidopsis thaliana GN=PRN1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.415e-51
Identity = 95/142 (66.90%), Postives = 122/142 (85.92%), Query Frame = 2
Query:    5 NGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEG-EGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRS-SKQLRFVLIAGQPLNEPVVQ 424
            NGLQLWINL S++KM EP+Y+E+ S +I RAE +GVEV++IAG+SMG++SPVYTRTPTMFLDFTLKP +Q HQ++PE+W AF Y IEG EGVFG++NSSA+SAH+V+V   GD +S WN+S S+ LRF+LIAG+P+ EPVVQ
Sbjct:  115 NGLQLWINLPSTEKMTEPKYKELSSLDIPRAEENGVEVKVIAGDSMGIKSPVYTRTPTMFLDFTLKPGSQTHQTVPESWTAFAYIIEGDEGVFGSLNSSAISAHHVVVFGPGDLVSVWNKSTSRSLRFLLIAGEPIGEPVVQ 256          
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: PIRL2_ARATH (Pirin-like protein At2g43120 OS=Arabidopsis thaliana GN=At2g43120 PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 3.738e-50
Identity = 97/144 (67.36%), Postives = 120/144 (83.33%), Query Frame = 2
Query:    8 GLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTI---EGEGVFGTVNSSAVSAHNVLVLSLG-DGLSAWNR-SSKQLRFVLIAGQPLNEPVVQ 424
            GLQLWINLSS++KMIEP YQE+   +I +AE +GVEV++IAGESMG++SPVYTRTPTMFLDFTL+P AQIHQ++PE+WNAF Y +   EG GVF + NSS + AH+V+V   G DG+S WN+ SSKQLRFVLIAG+P+ EPVVQ
Sbjct:  143 GLQLWINLSSNEKMIEPNYQELSHSDIPKAEQNGVEVKVIAGESMGIQSPVYTRTPTMFLDFTLQPGAQIHQNVPESWNAFAYILESGEGGGVFSSSNSSPIPAHSVVVFGPGNDGVSVWNKSSSKQLRFVLIAGEPIGEPVVQ 286          
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: PIRL4_ARATH (Putative pirin-like protein At3g59260 OS=Arabidopsis thaliana GN=At3g59260 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.527e-46
Identity = 91/141 (64.54%), Postives = 110/141 (78.01%), Query Frame = 2
Query:    8 GLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEG-EGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRS-SKQLRFVLIAGQPLNEPVVQ 424
            GLQLWINL SS KMIEP+  EI S EI  A+  GVEV++IAGESMGV+SP YT+TP MFLDFTL P+AQ HQ++PE+W AF Y +EG EGVF + +SS V AHNV+V   GD +S WN S S+ LRF+LIAG+P+ EPVVQ
Sbjct:   96 GLQLWINLPSSAKMIEPKNIEISSSEIPSADDYGVEVKVIAGESMGVKSPFYTKTPIMFLDFTLDPKAQTHQAVPESWTAFAYIVEGDEGVFSSSDSSTVQAHNVVVFGTGDEVSVWNTSNSRPLRFLLIAGEPIGEPVVQ 236          
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: PIRL1_ARATH (Pirin-like protein At1g50590 OS=Arabidopsis thaliana GN=At1g50590 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.981e-40
Identity = 84/144 (58.33%), Postives = 105/144 (72.92%), Query Frame = 2
Query:    8 GLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSL-GDGLSAWNRSSK--QLRFVLIAGQPLNEPVVQ 424
            GLQLWINLSS  K++EP YQEI S++I   E DGV VR+IAGE  GV+S + TRTPTM+LDFTL P ++I Q IP  WNAFVY ++G G FG   +  SA +AH++LVL L GD L AWN S     LRF+L+AG+P+ EP+VQ
Sbjct:  124 GLQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRTPTMYLDFTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDMLEAWNGSDSGLPLRFILVAGEPIGEPMVQ 267          
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: PIR_HUMAN (Pirin OS=Homo sapiens GN=PIR PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.056e-36
Identity = 71/141 (50.35%), Postives = 100/141 (70.92%), Query Frame = 2
Query:    5 NGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQ 424
            +GLQLW+NL SS+KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L P A+  Q IP+ W +F+YTI G+   G  ++   +  H+  VL  GD +   N+  K+  FVLIAG+PL EPV+Q
Sbjct:  112 HGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPLREPVIQ 252          
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: PIR_RAT (Pirin OS=Rattus norvegicus GN=Pir PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.794e-35
Identity = 70/141 (49.65%), Postives = 97/141 (68.79%), Query Frame = 2
Query:    5 NGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQ 424
            +GLQLW+NL  S+KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L   A+  Q IP+ W +F+YTI G+   G  ++   +  H   VL  GD +   N+  K+  FVLIAG+PL EPVVQ
Sbjct:  112 HGLQLWVNLKRSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDQGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHRTAVLGEGDTVQLENKDPKRSHFVLIAGEPLREPVVQ 252          
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: PIR_MOUSE (Pirin OS=Mus musculus GN=Pir PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.202e-34
Identity = 69/141 (48.94%), Postives = 97/141 (68.79%), Query Frame = 2
Query:    5 NGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQ 424
            +GLQLW+NL  S+KM+ P+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L   A+  Q IP+ W +F+YTI G+   G  ++   +  H+  VL  GD +   N+  K+  FVLIAG+PL EPVVQ
Sbjct:  112 HGLQLWVNLRRSEKMVAPQYQELKSEEIPKPTKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDQGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDAVQLENKDPKRSHFVLIAGEPLREPVVQ 252          
BLAST of CB417338 vs. ExPASy Swiss-Prot
Match: Y133_THEAC (Pirin-like protein Ta0133 OS=Thermoplasma acidophilum GN=Ta0133 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 2
Query:    8 GLQLWINLSSSDKMIEPRYQEIPSEEIKRAETD-GVEVRIIAGE--------SMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPV 418
            G+QLW+N+ +S KM +P Y+ I S++I +   D G  +RI+AG         +   +  +  R    +++  ++P  +   S+PE   A +  +EG      VN S  +  NV VLS  +G   +  S    R + +AG+PLNEP+
Sbjct:   85 GIQLWLNMPASSKMADPAYRSIRSDQIPQISDDYGNRIRIVAGTVNRVSGALNENFQYDLMQRIDPYYVEILMEPDTRTSLSVPEGHRAIMAIVEGS---IRVNGSTFNEKNVAVLS-KEGTDIFIDSQANSRLIFLAGKPLNEPI 226          
The following BLAST results are available for this feature:
BLAST of CB417338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PIRL_SOLLC8.047e-5368.79Pirin-like protein OS=Solanum lycopersicum PE=2 SV... [more]
PRN1_ARATH4.415e-5166.90Pirin-1 OS=Arabidopsis thaliana GN=PRN1 PE=1 SV=1[more]
PIRL2_ARATH3.738e-5067.36Pirin-like protein At2g43120 OS=Arabidopsis thalia... [more]
PIRL4_ARATH9.527e-4664.54Putative pirin-like protein At3g59260 OS=Arabidops... [more]
PIRL1_ARATH5.981e-4058.33Pirin-like protein At1g50590 OS=Arabidopsis thalia... [more]
PIR_HUMAN1.056e-3650.35Pirin OS=Homo sapiens GN=PIR PE=1 SV=1[more]
PIR_RAT5.794e-3549.65Pirin OS=Rattus norvegicus GN=Pir PE=1 SV=1[more]
PIR_MOUSE2.202e-3448.94Pirin OS=Mus musculus GN=Pir PE=2 SV=1[more]
Y133_THEAC1.389e-1230.82Pirin-like protein Ta0133 OS=Thermoplasma acidophi... [more]
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Properties
Property NameValue
Genbank descriptionEST0416 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P088 similar to pirin-like protein (acc# Q9SEE4), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417338 ID=CB417338; Name=CB417338; organism=Citrus sinensis; type=EST; length=424bp
ACAAAATGGTTTACAACTTTGGATCAATCTATCTTCCAGTGACAAAATGA
TTGAACCGAGGTATCAAGAAATTCCAAGCGAGGAGATAAAAAGGGCAGAG
ACAGATGGGGTCGAAGTCCGAATAATAGCCGGAGAATCGATGGGAGTCCG
GTCTCCGGTTTACACAAGAACACCGACGATGTTTCTTGATTTTACTTTGA
AACCCAGGGCTCAAATTCACCAGAGCATCCCAGAAACATGGAATGCCTTT
GTGTATACGATCGAAGGCGAAGGGGTTTTCGGCACGGTAAACTCATCGGC
CGTATCAGCCCATAACGTTTTAGTGCTGAGTCTTGGAGACGGCCTGAGTG
CGTGGAACAGATCTTCAAAGCAACTGAGATTTGTGCTCATCGCAGGGCAG
CCGCTGAACGAACCGGTGGTGCAG
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