CB417341

Overview
NameCB417341
Unique NameCB417341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1286 contig Csv1_Contig1286:281..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1_TOBAC (Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.788e-18
Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   13 SGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            SG   +  N E  +MK+ C   + SSR S+K  Q ++LD             VAASPPTEDAVV  EPLTKEDLV YLASGCK KEKWRI
Sbjct:   22 SGHSSITSNMEMLKMKDICFG-NISSRNSSKPMQGIYLDRVGVERRRGRLAIVAASPPTEDAVVAAEPLTKEDLVAYLASGCKSKEKWRI 110          
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1_SOLLC (Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.393e-17
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   13 SGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            SG   +  N +  RM+E C     SSR +++  Q  +L++            VAASPPTEDAVV  EPLTKEDLVGYLASGCK KEKWRI
Sbjct:   22 SGHRSIINNMDMFRMREICFGVDISSRNASRRVQGNYLNHIGVGSRRGDLTIVAASPPTEDAVVAAEPLTKEDLVGYLASGCKSKEKWRI 111          
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1_ARATH (Glutamate--cysteine ligase, chloroplastic OS=Arabidopsis thaliana GN=GSH1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    1 TIRRSGVCGLA----------KNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            T+  SGVC  A          +N +  RMKE   +F SS  YS  +S    L ++           VAASPPTE+AVV TEPLT+EDL+ YLASGCK K+K+RI
Sbjct:   12 TVVPSGVCSKAGTKAVVSGGVRNLDVLRMKE---AFGSS--YSRSLSTKSMLLHSVKRSKRGHQLIVAASPPTEEAVVATEPLTREDLIAYLASGCKTKDKYRI 110          
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1_BRAJU (Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea GN=GSH1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 43/91 (47.25%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   10 RSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            R+G   ++      RMKET VS           S+ L   +            VAASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRI
Sbjct:   21 RTGTKTVSGCVNVLRMKETYVS---------SYSRTLSTKSMLKRSKRGHQLIVAASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRI 102          
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1_MEDTR (Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula GN=GSH1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   55 MKETCVS--FSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            +++T +S  FS SS+ S    ++L    +           VAASPPTEDAVV TEPLTK+DL+ YLASGCK K+KWRI
Sbjct:   26 IRKTSISNTFSFSSKNSLSFKRILTSGGSRRFI-------VAASPPTEDAVVATEPLTKQDLIDYLASGCKTKDKWRI 96          
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1A_ORYSJ (Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  169 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            VAASPPTE+AV +TEPLTKEDLV YL SGCKPKE WRI
Sbjct:   43 VAASPPTEEAVQMTEPLTKEDLVAYLVSGCKPKENWRI 80          
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1A_ORYSI (Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  169 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            VAASPPTE+AV +TEPLTKEDLV YL SGCKPKE WRI
Sbjct:   43 VAASPPTEEAVQMTEPLTKEDLVAYLVSGCKPKENWRI 80          
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1B_ORYSJ (Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  169 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            VAASPPTE+AV +TEPLTKEDL+ YL SGCKPKE WRI
Sbjct:   47 VAASPPTEEAVQMTEPLTKEDLMAYLVSGCKPKENWRI 84          
BLAST of CB417341 vs. ExPASy Swiss-Prot
Match: GSH1B_ORYSI (Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  169 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRI 282
            VAASPPTE+AV +TEPLTKEDL+ YL SGCKPKE WRI
Sbjct:   47 VAASPPTEEAVQMTEPLTKEDLMAYLVSGCKPKENWRI 84          
The following BLAST results are available for this feature:
BLAST of CB417341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GSH1_TOBAC4.788e-1854.44Glutamate--cysteine ligase, chloroplastic OS=Nicot... [more]
GSH1_SOLLC1.393e-1752.22Glutamate--cysteine ligase, chloroplastic OS=Solan... [more]
GSH1_ARATH1.220e-1346.15Glutamate--cysteine ligase, chloroplastic OS=Arabi... [more]
GSH1_BRAJU2.719e-1347.25Glutamate--cysteine ligase, chloroplastic OS=Brass... [more]
GSH1_MEDTR7.910e-1351.28Glutamate--cysteine ligase, chloroplastic OS=Medic... [more]
GSH1A_ORYSJ3.006e-1284.21Glutamate--cysteine ligase A, chloroplastic OS=Ory... [more]
GSH1A_ORYSI3.006e-1284.21Glutamate--cysteine ligase A, chloroplastic OS=Ory... [more]
GSH1B_ORYSJ6.696e-1281.58Glutamate--cysteine ligase B, chloroplastic OS=Ory... [more]
GSH1B_ORYSI6.696e-1281.58Glutamate--cysteine ligase B, chloroplastic OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionEST0419 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P091 similar to glutamate-cysteine ligase (acc# O22493), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417341 ID=CB417341; Name=CB417341; organism=Citrus sinensis; type=EST; length=284bp
ACAATCAGACGAAGTGGGGTTTGTGGCTTGGCAAAAAATGCTGAGGCATC
TAGGATGAAGGAAACTTGTGTTAGTTTCTCTTCCTCATCACGCTATTCTG
CCAAGATATCACAAGTTTTACATCTAGACAATGCAGGGATAGGAATTCGA
AGAGGACGTCGATCTATTGTTGCAGCTAGTCCTCCCACGGAGGATGCTGT
TGTTGTAACAGAGCCATTGACCAAAGAGGATCTAGTTGGATACCTTGCCT
CTGGGTGCAAGCCTAAGGAAAAGTGGAGAATTGG
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