CB417342

Overview
NameCB417342
Unique NameCB417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:268..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.224e-29
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            VF+VDMPGLKSGDIKVQVE+DNVLLIS           AK++RMERRVGKFMRKF LPENAN +AISAVCQDGVLTVTV            TIEVK+A
Sbjct:   58 VFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.770e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            VF +DMPGLKSGDIKVQVEDDN+LLI            AKY+RMERRVGK MRKFVLPENAN +AISAVCQDGVL+VTV            TI+VK+A
Sbjct:   62 VFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.496e-27
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            VF+VDMPG+KSGDIKVQVED+NVLLIS            KY++MERR+GK MRKFVLPENAN+EAISA+ QDGVLTVTV+           TI+VK+A
Sbjct:   55 VFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.696e-27
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            VFIVDMPGLKSGDIKVQVE DNVL+IS            KYVRMERR+GKFM+KF LPE+AN + ISA+CQDGVLTVTV+           TI+V++A
Sbjct:   63 VFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.654e-26
Identity = 66/98 (67.35%), Postives = 70/98 (71.43%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXX-AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKI 293
            VFI+DMPGLKSGDIKVQV+ DNVL IS            AKYVRMERRVGK MRKFVLPENAN E I+AVCQDGVLTVTV+           TIEVKI
Sbjct:   57 VFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 3
Query:    6 FIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            F+VDMPGL +GDI+VQVED+ VL++S           AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIEVK+A
Sbjct:   68 FVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.320e-25
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXX--AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            VFI DMPG+K+ +IKVQVEDDNVL++S              KY+RMERRVGKFMRKFVLPENANVEAI+AV QDGVL VTV+           T+EVK+A
Sbjct:   68 VFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 3
Query:    6 FIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            F+VDMPGL +GDIKVQVED+ VL+IS           AKY+RMERR+GKFMRKFVLP+NA+++ ISAVC+DGVLTVTV+           TIEVK+A
Sbjct:   66 FVVDMPGLGTGDIKVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.640e-24
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 3
Query:    6 FIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            F+VDMPGL +GDI+VQVED+ VL+IS           AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIE+K+A
Sbjct:   59 FVVDMPGLSTGDIRVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = 3
Query:    6 FIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXX----AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            F+VDMPGLKS DIKVQVE++ +L+IS                KY+RMERR+GKFMRKFVLP+NA+V+ ISAVCQDGVLTVTV+           TIEVK+A
Sbjct:   66 FVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
The following BLAST results are available for this feature:
BLAST of CB417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HSP21_SOLPE1.224e-2968.3717.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_SOYBN8.770e-2865.3117.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_PEA1.496e-2763.2717.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN9.696e-2762.2417.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP21_IPONI1.654e-2667.3517.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_MAIZE2.388e-2557.7317.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP22_IPONI5.320e-2561.0018.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE1.185e-2460.8217.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE2.640e-2457.7317.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP18_ORYSJ3.449e-2458.4218.0 kDa class II heat shock protein OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionEST0420 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P092 similar to small MW heat shock protein, class II (acc# AAD41409), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417342 ID=CB417342; Name=CB417342; organism=Citrus sinensis; type=EST; length=394bp
ACGTGTTCATCGTCGACATGCCCGGACTGAAGTCGGGGGACATCAAGGTC
CAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGAGAGAGGAAGCGGGA
GGAGGAGAAAGAGGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTCGGCA
AGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATT
TCGGCTGTGTGTCAGGACGGAGTGTTGACTGTGACCGTCGATAAGCTGCC
ACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAA
CTTTAAAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTAT
TTGCCGGTTGTTGTTATGAATAATTTTGCTTGTGGGTGTGACGG
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