CB417344

Overview
NameCB417344
Unique NameCB417344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig380 contig Csv1_Contig380:1..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417344 vs. ExPASy Swiss-Prot
Match: DEF1B_SOLLC (Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum GN=PDF1B PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.507e-22
Identity = 63/121 (52.07%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 AMACATRLCSSSLPHALFPVLINQTAVSTKLLRFNRLYSTARLFSSPNRTNLPLLT---QAKRRYGFSTKEDPVASPADLRFERSLKIVEYPDPILRAKNKRIDTFDDNLKKLVDEMFDFM 354
            AMA A+   SSS    L P+L   ++ S      +R  S   LF S +    P L    QA+R     TK D +A+PADL F   LKIVEYPDPILRAKNKRID FD NLKKLVDEMFD M
Sbjct:    2 AMAAASWASSSSFTRFLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIM 122          
BLAST of CB417344 vs. ExPASy Swiss-Prot
Match: DEF1B_ARATH (Peptide deformylase 1B, chloroplastic OS=Arabidopsis thaliana GN=PDF1B PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.381e-19
Identity = 58/116 (50.00%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   10 CATRLCSSSLPHALFPVLINQTAVSTKLLRFNRLYSTARLFSSPNRTNLPLLTQAKRRYG-FSTKEDPVASPADLRFERSLKIVEYPDPILRAKNKRIDTFDDNLKKLVDEMFDFM 354
            C   L +  L   L PVL  +   +T    + RL ST    S+ NRT+ PL +  +      S K+D VAS  D++FE  LKIVEYPDPILRAKNKRID FD+NLK LVD MFD M
Sbjct:    4 CNCFLQAPPLSRILLPVLSRRA--TTLSAGYGRLKSTVTFCSTVNRTS-PLTSSVRAEVKRVSRKDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVM 116          
BLAST of CB417344 vs. ExPASy Swiss-Prot
Match: DEF1B_ORYSJ (Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica GN=PDF1B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.920e-14
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  163 LTQAKRRYGFST--------KEDPVASPADLRFERSLKIVEYPDPILRAKNKRIDTFDDNLKKLVDEMFDFM 354
            L  A+ R GF +        +++  A+ ADL+FE  LK+V+YPDPILRA+NKRI+TFDDNL+ L DEMFD M
Sbjct:   42 LAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVM 113          
The following BLAST results are available for this feature:
BLAST of CB417344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DEF1B_SOLLC9.507e-2252.07Peptide deformylase 1B, chloroplastic OS=Solanum l... [more]
DEF1B_ARATH3.381e-1950.00Peptide deformylase 1B, chloroplastic OS=Arabidops... [more]
DEF1B_ORYSJ1.920e-1454.17Peptide deformylase 1B, chloroplastic OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionEST0422 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P094 similar to peptide deformylase (acc# Q9FV54), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417344 ID=CB417344; Name=CB417344; organism=Citrus sinensis; type=EST; length=354bp
GCCATGGCTTGTGCGACTCGGCTTTGCTCATCTTCTTTGCCACACGCACT
CTTTCCCGTTCTCATTAACCAAACAGCTGTCTCCACGAAACTCCTCCGGT
TCAACCGACTCTACTCGACCGCTCGGCTCTTTTCCTCCCCGAACCGGACC
AACCTTCCGCTTCTCACCCAGGCTAAACGCCGCTACGGCTTCTCAACCAA
AGAAGACCCAGTTGCTTCTCCTGCTGATCTTCGTTTTGAACGGTCACTAA
AAATTGTGGAGTATCCGGACCCGATATTGAGAGCGAAAAACAAGAGAATT
GATACATTCGACGACAACTTGAAGAAGTTAGTTGACGAGATGTTCGACTT
TATG
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