CB417350

Overview
NameCB417350
Unique NameCB417350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: TMCO4_HUMAN (Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.348e-24
Identity = 54/121 (44.63%), Postives = 80/121 (66.12%), Query Frame = 3
Query:    3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQLILE 359
            RPVTLIG+SLGARVI+ CL+ +A+ +   GI+E V+LLGAP+  + ++WE  RK+V+GR IN Y   DW L+  +R S +   +AG+QP+      +EN+D+T ++ GH  Y      IL+
Sbjct:  396 RPVTLIGFSLGARVIYFCLQEMAQEKDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRVENVDLTSVVSGHLDYAKQMDAILK 516          
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: TMCO4_MOUSE (Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 3
Query:    3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQLILE 359
            RPVTLIG+SLGARVI+ CL+ +A+ +   GI+E VVLLGAP+    ++WE  R +V+GR IN Y   DW L+  +R S +   +AG+QP+      +EN+D+T ++ GH  Y      IL+
Sbjct:  393 RPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKHWEPFRNVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLTSVVNGHLDYAKQMDAILK 513          
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: TMCO4_RAT (Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.543e-23
Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = 3
Query:    3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQLILE 359
            RPVTLIG+SLGARVI+ CL+ +A+ +   GI+E VVLLGAP+    + WE  R +V+GR IN Y   DW L+  +R S +   +AG+QP+      +EN+D++ ++ GH  Y     +IL+
Sbjct:  393 RPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRNVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLSSVVNGHLDYAKKMDVILK 513          
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: YELD_SCHPO (Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe GN=SPAC6F6.13c PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 3
Query:    3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQG-LAGIQPINGL-GIENIDVTHLIEGHSSYLWASQLIL 356
            RPVTL+GYSLGARVI+ CL  L E +    I+E V L G P+  K  +W     +V+GRF+N Y  NDW L   FRA+    G +AG++ I+ + GIENIDVT+L+ GH +Y  +  ++L
Sbjct:  568 RPVTLVGYSLGARVIYYCLREL-EKKKEFSIIENVYLFGTPVIFKRTSWLKAASVVSGRFVNGYKKNDWILGYLFRATSGGIGRVAGLRQIDCIPGIENIDVTNLVSGHLAYRESMPILL 686          
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: YK68_SCHPO (Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe GN=SPAC607.08c PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 3
Query:    3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLW-ASQLILERLELD 374
            RPVTLIG+SLGAR I +CL +LA+      +VE V+++GAP+    + W  +R +VAGRF+N Y+ +D+ L + +R +      AG+ P+  +   +EN+DV  L+EGH  Y W  ++++ ERL  D
Sbjct:  389 RPVTLIGFSLGARTILECLLHLADRG-ETNLVENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYVLQLVYRVNSAQSTAAGLGPVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYD 514          
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: TMCO4_CAEEL (Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans GN=F35D11.3 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.015e-20
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 3
Query:    3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI---NGLGIENIDVTHLIEGHSSY 332
            RP+TLIG+SLGARVIF CL  +++   + GI+E V+LLGAP++   + W  V  +V+GR IN Y   DW L   +R       +AG  PI   N   I N +++H+++GH  Y
Sbjct:  426 RPITLIGFSLGARVIFHCLLTMSKRSESVGIIEDVILLGAPVTASPKEWSKVCTVVSGRVINGYCETDWLLRFLYRTMSAQFRIAGTGPIDNRNSKKIYNYNLSHIVKGHMDY 538          
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: YFD4_YEAST (Uncharacterized membrane protein YFL034W OS=Saccharomyces cerevisiae GN=YFL034W PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLS-QGLAGIQPINGL-GIENIDVTHLIEGHSSYLWASQLILERL 365
            RP+TL+G+S+GARVIF CL  L + +   G++E V L G P  +K +     R +V+GRF+N Y+  DW LA  FRA+      + GI  I  + GIENI+ T  ++GH +Y  +   +L+R+
Sbjct:  751 RPITLVGFSIGARVIFSCLIELCKKKA-LGLIENVYLFGTPAVMKKEQLVMARSVVSGRFVNGYSDKDWFLAYLFRAAAGGFSAVMGISTIENVEGIENINCTEFVDGHLNYRKSMPKLLKRI 872          
The following BLAST results are available for this feature:
BLAST of CB417350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TMCO4_HUMAN1.348e-2444.63Transmembrane and coiled-coil domain-containing pr... [more]
TMCO4_MOUSE6.692e-2444.63Transmembrane and coiled-coil domain-containing pr... [more]
TMCO4_RAT2.543e-2343.80Transmembrane and coiled-coil domain-containing pr... [more]
YELD_SCHPO8.180e-2246.67Uncharacterized membrane protein C6F6.13c OS=Schiz... [more]
YK68_SCHPO4.060e-2140.94Uncharacterized membrane protein C6F6.13c OS=Schiz... [more]
TMCO4_CAEEL2.015e-2042.48Uncharacterized membrane protein F35D11.3 OS=Caeno... [more]
YFD4_YEAST2.909e-1940.65Uncharacterized membrane protein YFL034W OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionEST0430 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P103 similar to unknown Arabidopsis protein (acc# AAO42809), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417350 ID=CB417350; Name=CB417350; organism=Citrus sinensis; type=EST; length=485bp
ACCGGCCTGTGACACTTATAGGTTACTCACTTGGAGCGAGGGTCATATTC
AAGTGCCTTGAAAATTTGGCCGAGAATGAATGTAATGCTGGAATTGTAGA
AAGAGTTGTTCTTCTTGGGGCACCCATTTCGATTAAAGATCAGAACTGGG
AAGCTGTTAGAAAGATGGTGGCTGGAAGATTTATTAATTGTTATGCCACA
AATGACTGGACACTTGCAATTGCATTCCGAGCTAGTTTACTTTCACAAGG
TTTAGCTGGGATTCAACCAATTAATGGTCTGGGGATTGAGAATATTGATG
TAACTCATCTTATTGAAGGTCACTCTTCCTATCTATGGGCGTCACAGCTG
ATCTTGGAGCGGCTTGAACTGGATGCTTATTATCCTGTTTTCAGAAGAGC
ACCATAGGGTAACGATTGCGTTTTTCTTTGGTCAGTCCCTGACTGAACCG
TGGGATTAAAAATTTAAAATGGCCTGATCTCTCTG
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