CB417350
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: TMCO4_HUMAN (Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.348e-24 Identity = 54/121 (44.63%), Postives = 80/121 (66.12%), Query Frame = 3 Query: 3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQLILE 359 RPVTLIG+SLGARVI+ CL+ +A+ + GI+E V+LLGAP+ + ++WE RK+V+GR IN Y DW L+ +R S + +AG+QP+ +EN+D+T ++ GH Y IL+ Sbjct: 396 RPVTLIGFSLGARVIYFCLQEMAQEKDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRVENVDLTSVVSGHLDYAKQMDAILK 516
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: TMCO4_MOUSE (Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24 Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 3 Query: 3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQLILE 359 RPVTLIG+SLGARVI+ CL+ +A+ + GI+E VVLLGAP+ ++WE R +V+GR IN Y DW L+ +R S + +AG+QP+ +EN+D+T ++ GH Y IL+ Sbjct: 393 RPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKHWEPFRNVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLTSVVNGHLDYAKQMDAILK 513
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: TMCO4_RAT (Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 2.543e-23 Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = 3 Query: 3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQLILE 359 RPVTLIG+SLGARVI+ CL+ +A+ + GI+E VVLLGAP+ + WE R +V+GR IN Y DW L+ +R S + +AG+QP+ +EN+D++ ++ GH Y +IL+ Sbjct: 393 RPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRNVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLSSVVNGHLDYAKKMDVILK 513
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: YELD_SCHPO (Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe GN=SPAC6F6.13c PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22 Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 3 Query: 3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQG-LAGIQPINGL-GIENIDVTHLIEGHSSYLWASQLIL 356 RPVTL+GYSLGARVI+ CL L E + I+E V L G P+ K +W +V+GRF+N Y NDW L FRA+ G +AG++ I+ + GIENIDVT+L+ GH +Y + ++L Sbjct: 568 RPVTLVGYSLGARVIYYCLREL-EKKKEFSIIENVYLFGTPVIFKRTSWLKAASVVSGRFVNGYKKNDWILGYLFRATSGGIGRVAGLRQIDCIPGIENIDVTNLVSGHLAYRESMPILL 686
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: YK68_SCHPO (Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe GN=SPAC607.08c PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21 Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 3 Query: 3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLW-ASQLILERLELD 374 RPVTLIG+SLGAR I +CL +LA+ +VE V+++GAP+ + W +R +VAGRF+N Y+ +D+ L + +R + AG+ P+ + +EN+DV L+EGH Y W ++++ ERL D Sbjct: 389 RPVTLIGFSLGARTILECLLHLADRG-ETNLVENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYVLQLVYRVNSAQSTAAGLGPVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYD 514
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: TMCO4_CAEEL (Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans GN=F35D11.3 PE=2 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.015e-20 Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 3 Query: 3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI---NGLGIENIDVTHLIEGHSSY 332 RP+TLIG+SLGARVIF CL +++ + GI+E V+LLGAP++ + W V +V+GR IN Y DW L +R +AG PI N I N +++H+++GH Y Sbjct: 426 RPITLIGFSLGARVIFHCLLTMSKRSESVGIIEDVILLGAPVTASPKEWSKVCTVVSGRVINGYCETDWLLRFLYRTMSAQFRIAGTGPIDNRNSKKIYNYNLSHIVKGHMDY 538
BLAST of CB417350 vs. ExPASy Swiss-Prot
Match: YFD4_YEAST (Uncharacterized membrane protein YFL034W OS=Saccharomyces cerevisiae GN=YFL034W PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19 Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 3 Query: 3 RPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLS-QGLAGIQPINGL-GIENIDVTHLIEGHSSYLWASQLILERL 365 RP+TL+G+S+GARVIF CL L + + G++E V L G P +K + R +V+GRF+N Y+ DW LA FRA+ + GI I + GIENI+ T ++GH +Y + +L+R+ Sbjct: 751 RPITLVGFSIGARVIFSCLIELCKKKA-LGLIENVYLFGTPAVMKKEQLVMARSVVSGRFVNGYSDKDWFLAYLFRAAAGGFSAVMGISTIENVEGIENINCTEFVDGHLNYRKSMPKLLKRI 872 The following BLAST results are available for this feature:
BLAST of CB417350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB417350 ID=CB417350; Name=CB417350; organism=Citrus sinensis; type=EST; length=485bpback to top |