CB417351

Overview
NameCB417351
Unique NameCB417351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length260
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8560 contig Csv1_Contig8560:192..451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417351 vs. ExPASy Swiss-Prot
Match: UBR7_HUMAN (Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.428e-25
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 TYSKGYMKRQAIFSCLSCAPEGN--AGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVY 258
            +YS+G +KRQA+++C +C PEG   AG+C ACS  CH  H++ EL+TKRNFRCDCGNSKF    CKL P K   N+ N YN NF G+Y
Sbjct:   47 SYSQGSVKRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLY 134          
BLAST of CB417351 vs. ExPASy Swiss-Prot
Match: UBR7_MOUSE (Putative E3 ubiquitin-protein ligase UBR7 OS=Mus musculus GN=Ubr7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.866e-25
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 TYSKGYMKRQAIFSCLSCAPEGN--AGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVY 258
            +YS+G + RQA+++C +C PEG   AG+C ACS  CH  H++ EL+TKRNFRCDCGNSKF    CKLFP K   N+ N YN NF G+Y
Sbjct:   47 SYSQGSVGRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFFGLY 134          
BLAST of CB417351 vs. ExPASy Swiss-Prot
Match: MLO2_SCHPO (Protein mlo2 OS=Schizosaccharomyces pombe GN=mlo2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.870e-17
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 TYSKGYMKRQAIFSCLSCAPEGNA--GVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKG 252
            TYS GY+K Q +++CL+C     +   VC +CS++CH  H++V+L+ KR+FRCDCG ++     C L  S D   +EN YNHNF+G
Sbjct:   36 TYSMGYLK-QPLYACLTCQKASGSLNAVCYSCSISCHADHDLVDLFNKRHFRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNFEG 120          
The following BLAST results are available for this feature:
BLAST of CB417351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBR7_HUMAN1.428e-2556.82Putative E3 ubiquitin-protein ligase UBR7 OS=Homo ... [more]
UBR7_MOUSE1.866e-2556.82Putative E3 ubiquitin-protein ligase UBR7 OS=Mus m... [more]
MLO2_SCHPO1.870e-1745.35Protein mlo2 OS=Schizosaccharomyces pombe GN=mlo2 ... [more]
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Properties
Property NameValue
Genbank descriptionEST0431 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P104 similar to unknown Arabidopsis protein (acc# T08905), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417351 ID=CB417351; Name=CB417351; organism=Citrus sinensis; type=EST; length=260bp
ACCTATAGTAAAGGTTATATGAAGAGACAAGCTATTTTCTCATGCCTTAG
TTGTGCCCCAGAAGGAAATGCTGGAGTATGCACAGCATGCTCATTGACTT
GCCATGATGGACACGAGATCGTGGAGCTGTGGACCAAGAGAAATTTTAGG
TGTGATTGTGGAAATTCAAAGTTTGGGGAGTTCTTCTGCAAACTTTTCCC
CAGTAAAGATGTAGAAAATGCTGAGAATTCATATAATCATAACTTTAAAG
GTGTATACTG
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