CB417360

Overview
NameCB417360
Unique NameCB417360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6778 contig Csv1_Contig6778:374..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.435e-50
Identity = 96/161 (59.63%), Postives = 121/161 (75.16%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSS-----RFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IP+FFG + +++ DPFS DVW+PFKDF FP+  S      F RE SA V+TR+D KETPEAHVFK D+ GL KE+VK+QIEDD+VLQI+ +RNVE+EDKN+TWHRVERS GKF+RRFRLPEN K++QV+AS+E+G                 AIEISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.072e-49
Identity = 93/158 (58.86%), Postives = 120/158 (75.95%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAF--PSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPSFFG +  ++ DPFS DVW+PFKDF F   +LS+ FPRE SA V+TR+D KETPEAHVFK DL G+ KE+VK++IEDDRVLQI+ +R+VE+EDKN+ WHR+ERS GKF+RRFRLPEN K+DQV+A++E+G                  I+ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.873e-49
Identity = 95/156 (60.90%), Postives = 116/156 (74.36%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPSFFG +  S+ DPFS DVW+PFKDF FPS  S    E SA V+TR+D KETPEAHVFK D+ GL KE+VKL+I+D RVLQI+ +RNVE+EDKN+TWHRVERS GK +RRFRLPEN K+DQV+AS+E+G                 AI+ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSA---ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.291e-48
Identity = 93/156 (59.62%), Postives = 116/156 (74.36%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPS FG +  ++ DPFS DVW+PFKDF FP+  S    E SA VNTR+D KETPEAHVF+ D+ GL KE+VK+QIEDDRVLQI+ +RN+E+EDKN+TWHRVERS G F+RRFRLPEN K++QV+AS+E+G                 AIEISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSA---ENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.103e-48
Identity = 93/158 (58.86%), Postives = 117/158 (74.05%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFP--SLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPSFF  +  ++ DPFS DVW+P KDF F   S S+ FPRE  A V+TR+D KETPEAHVFK DL GL KE+VK+++EDDRVLQI+ +R+VE+EDKN+ WHRVERS GKFLRRFRLPEN K+D+V+AS+E+G                 +IEISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.137e-47
Identity = 92/156 (58.97%), Postives = 115/156 (73.72%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IP FFG +  ++ DPFS D+W+PFKDF  P+  S    E SA V+TR+D KETPEAHVFK D+ GL KE+VK+QIEDDRVLQI+ +RNVE+EDKN+TWHRVERS GKF RRFRLPEN K+++V+AS+E+G                 AIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPT--SSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.815e-45
Identity = 89/156 (57.05%), Postives = 111/156 (71.15%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPS FG    ++ DPFS D+W+PFKDF  P+  S    E SA VNTR+D KET EAHV K D+ GL KE+VK+QIEDDRVLQI+ +RNVE+EDKN+TWHRV+RS GKF+RRFRLPEN K++QV+A +E+G                  IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPT--SSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.281e-45
Identity = 86/157 (54.78%), Postives = 115/157 (73.25%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAF-PSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPSFFG +  ++ DPFS DVW+PFKDF    S +S F +ET+A VNT +D KETP+AHVFK DL GL KE+VK+++E+ +VLQI+ +RN E+E+KN+ WHRVERS GKFLRRFRLPEN K+D+V+A++ +G                 AI+ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.621e-44
Identity = 90/157 (57.32%), Postives = 114/157 (72.61%), Query Frame = 2
Query:   56 MAMIPSFFGSQHD-SILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IP  FG +   S+ DPFS DV++PFK+  F   +S    ETSA  NTR+D KETPEAHVFK DL GL KE+VK+++E+DRVLQI+ +RNVE+EDKN+TWHRVERS GKF+RRFRLPEN K+DQV+AS+E+G                 +IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSG---ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.626e-44
Identity = 88/157 (56.05%), Postives = 115/157 (73.25%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDS-ILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IP  FG +  S + DPFS DV++PF++  FPS +S    E+SA  NTR+D KETPE HVFKVDL GL KE+VK+++E+DRVLQI+ +RNVE+EDKN+ WHR+ERS GKF+RRFRLPEN K+DQV+AS+E+G                 +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSG---ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CB417360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP16_SOYBN1.435e-5059.6318.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA2.072e-4958.8618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOYBN7.873e-4960.9017.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN2.291e-4859.6217.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA5.103e-4858.8618.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP14_SOYBN1.137e-4758.9717.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP15_SOYBN1.815e-4557.0517.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA5.281e-4554.7817.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_SOLPE2.621e-4457.3217.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC7.626e-4456.0517.8 kDa class I heat shock protein OS=Solanum lyc... [more]

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Properties
Property NameValue
Genbank descriptionEST0441 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P115 similar to 18.5 kDa heat shock protein, class I (acc# AAN74634), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417360 ID=CB417360; Name=CB417360; organism=Citrus sinensis; type=EST; length=543bp
CGGCAACCAATCTAGTATCAAAACCTCACATTCTGTAAGCATTTATCAAG
AAAAAATGGCGATGATTCCAAGCTTCTTCGGTAGCCAGCATGACAGCATT
TTGGATCCCTTCTCTTTCGATGTTTGGAACCCGTTCAAGGACTTTGCTTT
CCCCTCACTTTCCTCTCGATTCCCTCGAGAAACCTCAGCTATTGTTAACA
CTCGCATGGACTGAAAGGAAACCCCAGAAGCTCACGTATTCAAGGTGGAT
CTTGCAGGTCTTACGAAAGAGGACGTGAAGCTCCAGATTGAAGACGACAG
GGTGCTTCAGATAACAGCAGACAGGAATGTTGAGAGGGAAGACAAGAATG
AGACATGGCATCGTGTAGAGCGCAGCAGAGGCAAGTTCTTGAGGAGGTTC
AGGTTGCCGGAGAATGGGAAGATTGATCAGGTTAGGGCTTCTATTGAGGA
CGGAGTTCTTACTGTTACAGTTCCTAAGGAAGAAGTGAAAAAACCTGAAC
TCAAGGCCATTGAAATCTCTGGTTGAAGCAGTATATGTTTATG
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