CB417365

Overview
NameCB417365
Unique NameCB417365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length251
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB417365_ssr90 microsatellite CB417365_ssr90:90..101. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.454e-15
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 2
Query:  125 NGVVEKGDSFD--PAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            NG  +KG SFD  P+APPPFKI EIRA+IPKHCWVKNPWRSLSY
Sbjct:   14 NGYQQKGSSFDFDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSY 57          
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.346e-14
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 2
Query:   41 RESSFHFSVS--LLAAAMEKERKLKNELNA-NGVV-EKGDSFDPAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            RE ++   VS  L  A++E+E+K  +  N  NGV  EK   FDP APPPF + +IRA IPKHCWVK+PWRS+SY
Sbjct:   55 RERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSY 128          
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   41 RESSFHFSVSLLAAAMEKERKLKNELNANGVVEKGDSFDPAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            RE ++   VS     ++ E + +N+     V+  G+ FDP APPPFK+ +IR  IPKHCWVK+PWRS+ Y
Sbjct:   56 REKNWALRVSAPLRVLQVEEEEENK-EGERVINGGEEFDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGY 124          
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 2
Query:   62 SVSLLAAAMEKERKLKNELNANGVVE----KGDSFDPAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            +VS ++   ++ER+       NG+V     KG+ FD  APPPF + +IRA IPKHCWVKNPWRS+SY
Sbjct:   73 NVSTVSGEDDRERE-----EFNGIVNVDEGKGEFFDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSY 134          
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.748e-12
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 2
Query:  107 KNELNANGVVEKGDSFDPAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            ++ +N +    K + FDP+A PPFKIG+IRA IPKHCWVK+P RS+SY
Sbjct:    8 RSNVNGDSGARKEEGFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSY 55          
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 2
Query:  140 KGDSFDPAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            K   FDP APPPF + +IRA IPKHCWVKNPW+S+SY
Sbjct:   42 KTQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSY 78          
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 2
Query:  152 FDPAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            FDP APPPF + +IRA IPKHCWVKNPW+SLSY
Sbjct:   88 FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSY 120          
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2
Query:   74 LAAAMEKERKLKNELNANGVVEKGDSFDPAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            +  AM++   +  +  A G  +K + FDP+A PPFKIG+IRA IPKHCWVK+P RS+SY
Sbjct:    1 MVVAMDQRTNVNGDPGA-GDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSY 58          
BLAST of CB417365 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 2
Query:  137 EKGDSFDPAAPPPFKIGEIRATIPKHCWVKNPWRSLSY 250
            E  + FDP APPPF + +IRA IPKHCWVKNPW S+SY
Sbjct:   76 EDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSY 113          
The following BLAST results are available for this feature:
BLAST of CB417365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FAD3E_SOYBN8.454e-1579.55Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SOYBN9.346e-1454.05Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_SESIN2.719e-1345.71Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_RICCO1.033e-1250.75Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3E_BRANA8.748e-1258.33Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_BRANA1.492e-1170.27Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH1.492e-1178.79Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3E_ARATH1.949e-1152.54Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3D_ARATH2.545e-1168.42Temperature-sensitive omega-3 fatty acid desaturas... [more]
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Properties
Property NameValue
Genbank descriptionEST0448 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P130 similar to microsomal omega-3-fatty acid desaturase (acc# AAN17504), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417365 ID=CB417365; Name=CB417365; organism=Citrus sinensis; type=EST; length=251bp
TTTTACTACACAACAACAGCTAGCAGCGGCTGAGACTGGGAGAGAAAGCT
CATTTCACTTCTCGGTTTCTTTGCTTGCTGCTGCAATGGAGAAAGAAAGA
AAGCTCAAGAATGAACTGAATGCCAATGGGGTTGTTGAGAAAGGAGATTC
CTTTGACCCAGCAGCTCCTCCTCCATTCAAGATTGGCGAGATCCGTGCTA
CCATTCCAAAGCATTGCTGGGTCAAGAATCCATGGAGGTCTTTGAGCTAT
G
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