CB610476

Overview
NameCB610476
Unique NameCB610476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610476_ssr278 microsatellite CB610476_ssr278:278..289. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43
Identity = 94/148 (63.51%), Postives = 106/148 (71.62%), Query Frame = 2
Query:  344 KAKRRSGSEFFDLEA-QVXXXXXXXXXXXXXXFIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSAIALDHLKNYI 784
            K K+ S S F D EA QV              FIVD G +LPDE G R   RR  LPR++  EDVE LERRIQ R++   H EYDEE T+VEQQALLPSVRDPKLWMVKCAIGRERE AVCLMQK ID+G++LQIRS +ALDHLKN+I
Sbjct:   81 KRKKPSASIFLDREAHQVDDEDEEEEDEAEDDFIVDNGTDLPDERGDRRYERR-FLPRDENDEDVEDLERRIQERFSSRHHEEYDEEATEVEQQALLPSVRDPKLWMVKCAIGREREVAVCLMQKFIDRGADLQIRSVVALDHLKNFI 227          
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 81/170 (47.65%), Postives = 101/170 (59.41%), Query Frame = 2
Query:  335 RKPKAKRRSGSEFFDLEAQVXXXXXXXXXXXXXX--------------FIVDGGAELPDEDGGRGIHRRPLLPR--EDEQEDVEALERR----IQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSAIALDHLKNYI 784
            R+   K+ SGS F D E +V                            FIV G A+LP+ED     HRR    R     +EDV+ LE+R    +  +YA+  + E D+   DV+QQALLPSVRDPKLW+VKCAIGRERE AVCLMQK +D+GSE +IRSAIALDHL+NY+
Sbjct:   50 RRGSKKKSSGSAFIDWEVEVDDDVEDDDDDVDVEDGKQQLKFGDFSLCFIVSGEADLPNEDSD---HRRQYYQRGFHPHEEDVDELEKRTLERLSTKYAKDDY-ELDD-VNDVDQQALLPSVRDPKLWLVKCAIGREREVAVCLMQKIVDRGSEFKIRSAIALDHLQNYV 214          
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_CHICK (Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784
            DED   G  R   L R+  +E+   L      +YA+SS   T Y   DE + D+ QQ LLP V+DP LW VKC IG ER  A+ LM+K I      + LQI+S +A +H+K YI
Sbjct:  113 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYI 222          
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_PONAB (Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784
            DED   G  R   L R+  +E+   L      +YA+SS   T Y   DE + D+ QQ LLP V+DP LW VKC IG ER  A+ LM+K I      + LQI+S +A +H+K YI
Sbjct:  112 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYI 221          
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_MOUSE (Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784
            DED   G  R   L R+  +E+   L      +YA+SS   T Y   DE + D+ QQ LLP V+DP LW VKC IG ER  A+ LM+K I      + LQI+S +A +H+K YI
Sbjct:  114 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYI 223          
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_HUMAN (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784
            DED   G  R   L R+  +E+   L      +YA+SS   T Y   DE + D+ QQ LLP V+DP LW VKC IG ER  A+ LM+K I      + LQI+S +A +H+K YI
Sbjct:  116 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYI 225          
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_DANRE (Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 2
Query:  467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEY-----DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQK-----CIDKGSELQIRSAIALDHLKNYI 784
            DED   G  R   L R+  +E   AL      +YA+SS  E+     ++ + D+ QQ LLP V+DP LW VKC IG ER  A+ LM+K     C D  + LQI+S +A +H+K YI
Sbjct:  115 DEDHS-GSRRLQNLWRDSREE---ALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFVAYQCTD--TPLQIKSVVAPEHVKGYI 224          
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5_USTMA (Transcription elongation factor SPT5 OS=Ustilago maydis GN=SPT5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 45/157 (28.66%), Postives = 73/157 (46.50%), Query Frame = 2
Query:  335 RKPKAKRRSGSEFFDLEAQVXXXXXXXXXXXXXXFIVDGGAELPDEDGGRGIHRRPLLP--------REDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDK---GSELQIRSAIALDHL 772
            ++ +AK++  + F D+EA+V                 DG  E    D    + RR            R++E  + EAL   ++ RY RS+      +  +V Q+ L+PSV DP LW V C  GRER+  + L++K + +    S ++I SA   D +
Sbjct:  193 QRRRAKKQRRNRFLDVEAEVDDDEEDLDEEEEELAREDGFIEEDIPDDTEDVQRRAAADNQRLDRFRRQEEDTNAEALAEELRQRYGRSARYAAQSDYAEVPQRLLMPSVEDPSLWGVPCKPGRERDIVMTLVRKAMAENFTSSPMRIISAFCRDSI 349          
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5_SCHPO (Transcription elongation factor spt5 OS=Schizosaccharomyces pombe GN=spt5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 51/157 (32.48%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  335 RKPKAKRRSGSEFFDLEAQVXXXXXXXXXXXXXXFIVDGGAELP---DEDGGRGIHRRPLLPREDEQE-DVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784
            R+ +A+    ++F D+EA+V                 DG  E     D  G    HR     R++ Q  D E L    + +Y RS     D  T++V Q+ LLPSV DP +W V+C IG+E++    +M+K +D     S L+I SA   D L  YI
Sbjct:  134 RRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEIGREDGFIEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAEEYREKYGRSQTVVGD--TSNVPQRLLLPSVNDPNIWAVRCKIGKEKDIVFTIMRKAMDLQYTSSPLEIISAFQRDSLVGYI 288          
The following BLAST results are available for this feature:
BLAST of CB610476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SPT51_ARATH1.193e-4363.51Putative transcription elongation factor SPT5 homo... [more]
SPT52_ARATH1.158e-3047.65Putative transcription elongation factor SPT5 homo... [more]
SPT5H_CHICK1.857e-1242.98Transcription elongation factor SPT5 OS=Gallus gal... [more]
SPT5H_PONAB2.425e-1242.98Transcription elongation factor SPT5 OS=Pongo abel... [more]
SPT5H_MOUSE2.425e-1242.98Transcription elongation factor SPT5 OS=Mus muscul... [more]
SPT5H_HUMAN2.425e-1242.98Transcription elongation factor SPT5 OS=Homo sapie... [more]
SPT5H_DANRE3.168e-1241.38Transcription elongation factor SPT5 OS=Danio reri... [more]
SPT5_USTMA5.974e-1128.66Transcription elongation factor SPT5 OS=Ustilago m... [more]
SPT5_SCHPO7.803e-1132.48Transcription elongation factor spt5 OS=Schizosacc... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_H05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610476 ID=CB610476; Name=CB610476; organism=Citrus sinensis; type=EST; length=785bp
GGGGATCTTCCTAACGCGTCGTTAAAATCCCGTCCTAGGGTGATATTTTC
TCTTTTCTGAATTCCTGTCAGTTAATTGTAATAAACTACTCAATAGTGAT
ACAGTGAGATTCAGATTTGATAAGAGTTCAAATATGCCTCGTCGACGGGA
TGACGAGTACGACGAGCAAGTCATGGACGATGAAATTGACGAAGAAGAAG
AGGAAGAAGACGATCGCTCCAGCAGGAAGCGGAGGAGATCGCAGTTCATA
GATGACGTGGCGGAGGAGGATGACGAAGAGGAGGAGGAGGATTATGACGA
TGATGAGGATTATGGAGGTGGTGGCGGCGCTGCCAGGAAGCCTAAGGCTA
AGAGGAGGTCCGGTTCGGAGTTTTTCGATCTGGAGGCGCAAGTCGATAGT
GATGAGGAAGAGGATGAGGAAGAAGGAGAAGACGACTTCATAGTAGATGG
TGGAGCTGAGTTACCTGATGAAGATGGTGGTAGAGGGATCCATCGCCGCC
CACTTCTTCCTCGGGAGGATGAGCAAGAAGATGTTGAAGCTCTTGAGAGA
AGGATTCAGGCAAGATATGCAAGGTCAAGTCACACAGAATATGATGAGGA
AACCACAGATGTGGAGCAGCAAGCTCTTTTGCCATCTGTTAGAGATCCAA
AGCTCTGGATGGTTAAGTGTGCGATTGGCCGTGAACGAGAGGCAGCCGTC
TGTCTAATGCAAAAGTGCATAGATAAAGGATCTGAATTGCAGATCAGGTC
TGCTATTGCTCTTGATCATCTTAAAAACTACATCT
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