CB610479

Overview
NameCB610479
Unique NameCB610479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610479_ssr315 microsatellite CB610479_ssr315:315..324. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5659 contig Csv1_Contig5659:543..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKN_ARATH (CBL-interacting serine/threonine-protein kinase 23 OS=Arabidopsis thaliana GN=CIPK23 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.346e-30
Identity = 59/73 (80.82%), Postives = 69/73 (94.52%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGDE 223
            GFDVK NN+K+KL GEK+GRKG L+VATE+F+VAPSLYMVE+RKSGGDTLEFHKFYKNL+TGLKD+VWK+ DE
Sbjct:  385 GFDVKTNNYKMKLTGEKSGRKGQLAVATEVFQVAPSLYMVEMRKSGGDTLEFHKFYKNLTTGLKDIVWKTIDE 457          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPK9_ORYSJ (CBL-interacting protein kinase 9 OS=Oryza sativa subsp. japonica GN=CIPK9 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.513e-26
Identity = 53/70 (75.71%), Postives = 65/70 (92.86%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKS 214
            GF+V+K N+K+KL+G+KTGRKG+LSVATE+FEVAPSL+MVELRK+GGDTLEFH FY N S+ LKD+VWKS
Sbjct:  377 GFNVRKQNYKMKLKGDKTGRKGYLSVATEVFEVAPSLHMVELRKTGGDTLEFHNFYNNFSSELKDIVWKS 446          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPK9_ARATH (CBL-interacting serine/threonine-protein kinase 9 OS=Arabidopsis thaliana GN=CIPK9 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.513e-26
Identity = 52/70 (74.29%), Postives = 67/70 (95.71%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKS 214
            GF+V+K+N+K+K++G+K+GRKG LSVATE+FEVAPSL++VELRK+GGDTLEFHKFYKN S+GLKDVVW +
Sbjct:  369 GFNVRKDNYKIKMKGDKSGRKGQLSVATEVFEVAPSLHVVELRKTGGDTLEFHKFYKNFSSGLKDVVWNT 438          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKN_ORYSJ (CBL-interacting protein kinase 23 OS=Oryza sativa subsp. japonica GN=CIPK23 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.598e-26
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWK------SGDE 223
            GF+V+K N+KLKLQGE  GRKG L++ATE+FEV PSLYMVELRKS GDTLEFHKFY N+S GLKDV+WK      +GDE
Sbjct:  365 GFNVQKRNYKLKLQGENPGRKGQLAIATEVFEVTPSLYMVELRKSNGDTLEFHKFYHNISNGLKDVMWKPESSIIAGDE 443          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKW_ORYSJ (CBL-interacting protein kinase 32 OS=Oryza sativa subsp. japonica GN=CIPK32 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGD 220
            GFDV+K N+KL+L+  K GRKG+L+VATEI +VAPSL+MVE+RK+ GDTLEFHKFYKNLS  LKDVVWKS D
Sbjct:  361 GFDVQKKNYKLRLEKVKAGRKGNLNVATEILQVAPSLHMVEVRKAKGDTLEFHKFYKNLSRTLKDVVWKSDD 432          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKQ_ARATH (CBL-interacting serine/threonine-protein kinase 26 OS=Arabidopsis thaliana GN=CIPK26 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.525e-23
Identity = 48/74 (64.86%), Postives = 63/74 (85.14%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGDET 226
            GFD++K N+K++L+    GRKG+L VATEIF+V+PSL+M+E+RK+ GDTLEFHKFYK LST L DVVWKSG+ +
Sbjct:  362 GFDIQKKNYKMRLENVTAGRKGNLRVATEIFQVSPSLHMIEVRKTKGDTLEFHKFYKKLSTSLNDVVWKSGESS 435          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKV_ORYSJ (CBL-interacting protein kinase 31 OS=Oryza sativa subsp. japonica GN=CIPK31 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 46/73 (63.01%), Postives = 62/73 (84.93%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGDE 223
            GFD++K N+K++++  K GRKG+L+VATE+F+VAPSL++VEL+K+ GDTLEF KFY+ LST LKDVVWK   E
Sbjct:  369 GFDIQKKNYKMRMENLKAGRKGNLNVATEVFQVAPSLHVVELKKAKGDTLEFQKFYRTLSTQLKDVVWKCDGE 441          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKX_ORYSJ (CBL-interacting protein kinase 33 OS=Oryza sativa subsp. japonica GN=CIPK33 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 54/88 (61.36%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    5 GFDVKKNN----------------FKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGD 220
            GFDV+K N                FKL+L+  K GRKG+L+VATEI +VAPSL+MVE+RK+ GDTLEFHKFYKNLS  LKDVVWKS D
Sbjct:  361 GFDVQKKNYKICSPCLTTICMNIPFKLRLEKVKAGRKGNLNVATEILQVAPSLHMVEVRKAKGDTLEFHKFYKNLSRTLKDVVWKSDD 448          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPK3_ARATH (CBL-interacting serine/threonine-protein kinase 3 OS=Arabidopsis thaliana GN=CIPK3 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGD 220
            GFDV+K N+K++L+  K GRKG+L+VATEIF+VAPSL+MV++ KS GDTLEFHKFYK LS  L+ VVW + +
Sbjct:  363 GFDVQKKNYKMRLENVKAGRKGNLNVATEIFQVAPSLHMVQVSKSKGDTLEFHKFYKKLSNSLEQVVWTNNE 434          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPK3_ORYSJ (CBL-interacting protein kinase 3 OS=Oryza sativa subsp. japonica GN=CIPK3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 43/72 (59.72%), Postives = 62/72 (86.11%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGD 220
            GF+++K N++++++  K GRKGHL++ATE+F+VAPSL++VEL+K+ GDTLEF KFY+ LST LKDVVW+  D
Sbjct:  368 GFNIQKRNYRMRMENIKEGRKGHLNIATEVFQVAPSLHVVELKKAKGDTLEFQKFYQTLSTQLKDVVWELED 439          
The following BLAST results are available for this feature:
BLAST of CB610479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CIPKN_ARATH8.346e-3080.82CBL-interacting serine/threonine-protein kinase 23... [more]
CIPK9_ORYSJ2.513e-2675.71CBL-interacting protein kinase 9 OS=Oryza sativa s... [more]
CIPK9_ARATH2.513e-2674.29CBL-interacting serine/threonine-protein kinase 9 ... [more]
CIPKN_ORYSJ5.598e-2670.89CBL-interacting protein kinase 23 OS=Oryza sativa ... [more]
CIPKW_ORYSJ3.072e-2473.61CBL-interacting protein kinase 32 OS=Oryza sativa ... [more]
CIPKQ_ARATH1.525e-2364.86CBL-interacting serine/threonine-protein kinase 26... [more]
CIPKV_ORYSJ8.366e-2263.01CBL-interacting protein kinase 31 OS=Oryza sativa ... [more]
CIPKX_ORYSJ1.864e-2161.36CBL-interacting protein kinase 33 OS=Oryza sativa ... [more]
CIPK3_ARATH2.434e-2163.89CBL-interacting serine/threonine-protein kinase 3 ... [more]
CIPK3_ORYSJ7.082e-2159.72CBL-interacting protein kinase 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_H09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610479 ID=CB610479; Name=CB610479; organism=Citrus sinensis; type=EST; length=621bp
GGGGGGTTTTGATGTGAAGAAAAATAATTTCAAGTTGAAGCTTCAAGGGG
AAAAAACTGGACGCAAGGGTCATTTATCTGTTGCAACAGAGATTTTTGAG
GTGGCCCCTTCACTTTACATGGTTGAGCTTCGAAAATCTGGAGGAGATAC
CTTAGAATTTCACAAGTTTTACAAAAACCTTTCGACTGGGCTGAAAGATG
TTGTTTGGAAATCAGGAGATGAAACAATTGTTGAAGGATCTGCAGTCGCT
GGTGGCGCAGGGTCTCAATAGCGGATTTCCTTTCATGACTTGCACTGCTG
AATATCTCCAGCAAATATATATATTGCTTTTGCACCATTGTATCTCAGCT
TTGTATTTTATCCTCTAGGCCATGTGTTTCCTTCATTTGTGATTCAGAAC
TCACTTCTCGTGTACCTTGGTTTGGCTTTTGTGTGGTTTCAGACTTCCAG
TTGTATCATCTCAACGGATATTGAACGTAGTCAATTACCTGCAAATAATC
AAAAAGACTCTCAGTCCACTGTCATTTTCATTTTGTTTGTTTTTAGTGAC
TTGTCTATGGACCAGAAAATTCAATAAAAATAATATATTACGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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