CB610597

Overview
NameCB610597
Unique NameCB610597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.067e-30
Identity = 106/243 (43.62%), Postives = 128/243 (52.67%), Query Frame = 2
Query:   44 KIFGQELNNSGHV--HTHFS---------------REKLAVRKMEERPS--WEAY-TNGNRTAF--PGIRNG-VHGFSWGNVQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHYQSQK---PMQMQIDFSGATSRPNVIARPLNADSEHSD--VEASCRDERTGTVEEXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            KIFG++L+NSG +  H H                 REKL VRKM++R     +AY  NGNR  F  PG  N  +   +W   +   + I          N++E+ +     F      SQ+   P QMQIDFS A+SR    A   N+D E      +A   DE                      E LNHVEAERQRREKLNQRFYALR+VVPNISKMDKASLLGDA++YINEL AKLKVME
Sbjct:  262 KIFGKDLHNSGFLQHHQHHQQQQQQPPQQQQHRQFREKLTVRKMDDRAPKRLDAYPNNGNRFMFSNPGTNNNTLLSPTWVQPENYTRPI----------NVKEVPSTDEFKFLPLQQSSQRLLPPAQMQIDFSAASSR----ASENNSDGEGGGEWADAVGADESGNN----RPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVME 486          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26
Identity = 90/236 (38.14%), Postives = 118/236 (50.00%), Query Frame = 2
Query:   35 GVPKIFGQELNNSGHVHTHFSREKLAVRK-MEER---PSWEAYTNGNRTAFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHYQSQKPMQMQIDFSG----ATSRPNVIARPLNADSEHSDVEASCRDER----------TGTVEEXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            G+ K+FGQ+L+ +     H   +KL VR+ ++ER    SWE Y N     F                          +  Q ++++ L N       +N        + QI+F+G    A+S P+      N   E S+   SC ++R             V+E              EEPLNHVEAERQRREKLNQRFYALR+VVPNISKMDKASLLGDAI+YI ELQ K+K+ME
Sbjct:  258 GIHKLFGQDLSGA-----HAYPKKLEVRRNLDERFTPQSWEGYNNNKGPTFG-------------------------YTPQRDDVKVLEN-------VNMVVDNNNYKTQIEFAGSSVAASSNPST-----NTQQEKSE---SCTEKRPVSLLAGAGIVSVVDEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIME 448          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.439e-24
Identity = 63/104 (60.58%), Postives = 73/104 (70.19%), Query Frame = 2
Query:  383 NVIARPLNADSEHSDVEASCRDERTGTVE--EXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            + + R    DS+HSD+EAS   E    VE  E              EEPLNHVEAERQRREKLNQRFY+LRAVVPN+SKMDKASLLGDAI+YINEL++KL+  E
Sbjct:  366 STVVRSAANDSDHSDLEASVVKEAI-VVEPPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAE 468          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 61/100 (61.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:  401 LNADSEHSDVEASCRDE----RTGTVEEXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            L  DS HSD+EAS   E    R     E              EEPLNHVEAERQRREKLNQRFY+LRAVVPN+SKMDKASLLGDAI+YI+EL++KL+  E
Sbjct:  370 LPCDSNHSDLEASVAKEAESNRVVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAE 469          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  410 DSEHSDVEASCRDERTGTVEEXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKL 676
            +S+HSD+EAS   E      E              EEPLNHVEAERQRREKLNQRFYALRAVVPN+SKMDKASLLGDAIAYINEL++K+
Sbjct:  416 ESDHSDLEASVVKE---VAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKV 501          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 60/124 (48.39%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  335 KPMQMQIDFSGAT------SRPNVIARPLNADSEHSDVEASCRDERTGTVEEXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            KP  M I+FS  T      S  +   + +   ++    E   +DE     +E              EE LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLL DAI YI ++Q K++V E
Sbjct:  251 KPRSMSINFSPKTEDDTGFSLESYEVQAIGGSNQVYGYEQG-KDETLYLTDEQKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKKIRVYE 373          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 2
Query:  515 EEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            ++PLNHVEAER RREKLN RFYALRAVVPN+SKMDK SLL DA+ YINEL++K + +E
Sbjct:  339 DKPLNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVE 396          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 2
Query:  524 LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            L+HVEAE+QRREKLN RFYALRA+VP +S+MDKASLL DA++YI  L++K+  +E
Sbjct:  248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLE 302          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  518 EPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            E L+HV AER+RREKLN++F  LR++VP ++KMDK S+LGD IAY+N L+ ++  +E
Sbjct:  360 EDLSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELE 416          
BLAST of CB610597 vs. ExPASy Swiss-Prot
Match: BH035_ARATH (Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2
Query:  530 HVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVME 688
            ++ +ER RR+KLNQR +ALR+VVPNI+KMDKAS++ DAI+YI  LQ + K +E
Sbjct:   56 NIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLE 108          
The following BLAST results are available for this feature:
BLAST of CB610597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BH013_ARATH2.067e-3043.62Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
AIB_ARATH1.061e-2638.14Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
ATR2_ARATH6.439e-2460.58Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH1.874e-2361.00Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
RAP1_ARATH2.447e-2366.29Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH003_ARATH2.532e-2048.39Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
BH028_ARATH6.896e-1874.14Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
BH014_ARATH5.464e-1567.27Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
TT8_ARATH4.329e-1256.14Transcription factor TT8 OS=Arabidopsis thaliana G... [more]
BH035_ARATH8.165e-1160.38Transcription factor bHLH35 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_G05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610597 ID=CB610597; Name=CB610597; organism=Citrus sinensis; type=EST; length=690bp
GGGTCCTAATTTGGGCATTTTGGACAGAGTTGAAGGAGTTCCAAAGATTT
TTGGTCAGGAATTGAACAACTCGGGCCATGTTCATACCCATTTTAGTAGG
GAGAAACTTGCTGTTAGAAAGATGGAAGAAAGGCCTTCATGGGAAGCTTA
CACAAATGGAAATAGGACTGCATTTCCGGGTATTCGAAATGGTGTTCATG
GTTTTAGTTGGGGAAATGTTCAAGGAGTGAAACAAGGGATCGCAACTGAA
ATCTTTGGTTCGCAAACTAACAATTTGCAAGAGCTGGTTAATGGGGTTAG
GGAAGATTTTCGGATTAACCACTATCAGTCACAAAAGCCAATGCAAATGC
AGATTGATTTCTCTGGGGCTACTTCGAGGCCTAATGTGATCGCCAGACCA
CTGAATGCTGATTCTGAGCATTCTGACGTGGAAGCTTCTTGCAGGGATGA
GCGTACAGGCACAGTTGAGGAGAGAAGGCCTCGGAAAAGAGGTAGAAAGC
CCGCAAATGGAAGAGAAGAGCCTCTCAACCACGTGGAGGCGGAGAGGCAA
CGGCGTGAGAAGCTAAACCAACGGTTCTATGCATTACGAGCTGTGGTACC
TAACATATCCAAGATGGATAAAGCATCGTTGCTGGGAGATGCCATTGCTT
ACATCAATGAGCTTCAAGCAAAGCTAAAGGTCATGGAAAC
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