CB610601

Overview
NameCB610601
Unique NameCB610601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610601 vs. ExPASy Swiss-Prot
Match: BR44_HUMAN (Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.161e-24
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   43 IDLMAANKLVALWNHPAGPKTIHFWAPTFRWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 324
            ++LM   KL  L+NHPAGP+T+ FWAP  +WG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   20 VELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113          
BLAST of CB610601 vs. ExPASy Swiss-Prot
Match: BR44_RAT (Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.686e-24
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   43 IDLMAANKLVALWNHPAGPKTIHFWAPTFRWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIKQDYFSESTEIE 366
            ++L+   KL  L+NHPAGP+T+ FWAP  +WG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R  K +   +S  I+
Sbjct:   20 VELLLPKKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGSAGASQLFRIWKYNQELKSKGIQ 127          
BLAST of CB610601 vs. ExPASy Swiss-Prot
Match: BR44_MOUSE (Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.814e-24
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   43 IDLMAANKLVALWNHPAGPKTIHFWAPTFRWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 324
            ++L+   KL  L+NHPAGP+T+ FWAP  +WG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   20 VELLLPKKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGSAGASQLFR 113          
BLAST of CB610601 vs. ExPASy Swiss-Prot
Match: BR44_PONAB (Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   43 IDLMAANKLVALWNHPAGPKTIHFWAPTFRWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 324
            ++LM   KL  L+NHPAGP+T+ FWAP  + G+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   20 VELMLPEKLRPLYNHPAGPRTVFFWAPIMKRGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113          
BLAST of CB610601 vs. ExPASy Swiss-Prot
Match: YAI9_SCHPO (UPF0041 protein C24B11.09 OS=Schizosaccharomyces pombe GN=SPAC24B11.09 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.603e-19
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   79 WNHPAGPKTIHFWAPTFRWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 324
            WNHPAGPKT+HFWAP  +W + ++ I D+++ PE +S  Q  A+ ATG IW+R+S+++ PKN+   +VN  +A  G  Q+SR
Sbjct:   10 WNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRPKNYFNATVNFFLAIVGAVQVSR 91          
BLAST of CB610601 vs. ExPASy Swiss-Prot
Match: YXX3_CAEEL (UPF0041 protein F53F10.3 OS=Caenorhabditis elegans GN=F53F10.3 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.093e-19
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   79 WNHPAGPKTIHFWAPTFRWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 324
            WNH AGPKT+ FWAPT +W +  A +AD ++P +K+S  Q  A+ ATG IW+RY +VITP N+ L SVN  +  TGL QL R
Sbjct:   31 WNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKLSLYQNSALFATGAIWTRYCLVITPINYYLSSVNFFVMCTGLAQLCR 112          
BLAST of CB610601 vs. ExPASy Swiss-Prot
Match: FMP43_YEAST (UPF0041 protein FMP43 OS=Saccharomyces cerevisiae GN=FMP43 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.090e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   79 WNHPAGPKTIHFWAPTFRWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 324
            WN   GPKT+HFWAPT +WG+  A + D  +P EK+S  Q L++ AT +IW+R+S VI PKN+ L SVN  +  T  Y L+R
Sbjct:   14 WNSETGPKTVHFWAPTLKWGLVFAGLNDIKRPVEKVSGAQNLSLLATALIWTRWSFVIKPKNYLLASVNFFLGCTAGYHLTR 95          
BLAST of CB610601 vs. ExPASy Swiss-Prot
Match: YHW2_YEAST (UPF0041 protein YHR162W OS=Saccharomyces cerevisiae GN=YHR162W PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.959e-17
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   79 WNHPAGPKTIHFWAPTFRWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 324
            W    GPKT+HFWAPT +WG+  A  +D  +P EKIS  Q L++ +T +IW+R+S VI P+N  L SVN  +  T  YQL R
Sbjct:   14 WQSETGPKTVHFWAPTLKWGLVFAGFSDMKRPVEKISGAQNLSLLSTALIWTRWSFVIKPRNILLASVNSFLCLTAGYQLGR 95          
The following BLAST results are available for this feature:
BLAST of CB610601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BR44_HUMAN2.161e-2452.13Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=... [more]
BR44_RAT3.686e-2447.22Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=... [more]
BR44_MOUSE4.814e-2451.06Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=... [more]
BR44_PONAB9.079e-2351.06Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=... [more]
YAI9_SCHPO1.603e-1947.56UPF0041 protein C24B11.09 OS=Schizosaccharomyces p... [more]
YXX3_CAEEL2.093e-1953.66UPF0041 protein F53F10.3 OS=Caenorhabditis elegans... [more]
FMP43_YEAST6.090e-1950.00UPF0041 protein FMP43 OS=Saccharomyces cerevisiae ... [more]
YHW2_YEAST1.959e-1748.78UPF0041 protein YHR162W OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_E03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610601 ID=CB610601; Name=CB610601; organism=Citrus sinensis; type=EST; length=593bp
GGGGAGAAAAGAGAAGGATAAGAAAGGAAAAAAAAAAAAGAAATCGATCT
GATGGCAGCTAACAAGCTCGTAGCTCTCTGGAACCACCCGGCTGGTCCTA
AAACCATTCATTTTTGGGCTCCAACATTCAGATGGGGCATCAGCATAGCA
AACATTGCAGACTTTTCAAAGCCACCAGAAAAGATCTCCTATCCTCAGCA
ACTAGCTGTTACTGCTACCGGAGTTATTTGGTCGCGCTACAGCATGGTGA
TTACTCCGAAAAACTGGAACCTTTTTAGTGTCAACGTTGCAATGGCTGGG
ACGGGCTTGTATCAACTATCACGCAAAATCAAGCAAGATTACTTCTCCGA
GAGCACCGAGATAGAGGCAGCTGCAGTGCAAGAATGATGATGCAAATTTC
CTAAAGCCTAAACTTGTACCATTTTTCCTTTTTTCTTTTTGCTATTGTGA
AAAACTGAATGCATTTCAAAAATGCTATCTTCGTTTGCTGTTGGATTGGT
TGGTGCGAGTTGTCTAACGGTGCCAAATTGATTGTAATGAAAATGAAAAT
TAATATGATTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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