CB610612

Overview
NameCB610612
Unique NameCB610612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2579 contig Csv1_Contig2579:402..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.579e-22
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTCG 290
            MSDTCGNCDCAD++QCVKKGS Y AD +ET+ S ++  VVMD  AAE +G CKCGP+ +C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.857e-17
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTC 287
            MSD CGNCDCAD SQCVKKG+  + D VETD S++   VVM V AAE+ G CKCG +  CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGN--SIDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.426e-17
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  102 TCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTCGS 293
            TCGNCDC D+SQCVKKG+ Y  D VET+ S+V  V+V   +AAE +G CKCG   AC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.627e-15
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTC 287
            MS  C NCDC+D SQC KKG  +    VET+   + TV+ MD  AAE  GNCKCGP+ ACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.627e-15
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTCG 290
            MS  C NCDCAD +QCVKKG+ Y    VET+   + TV V D  AAE +G CKCG   +CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.278e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+ Y    VE + S        +V A E  G CKCG + +C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.278e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+ Y    VE + S        +V A E  G CKCG + +C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+ Y    V+ + S     +  +V   E +G CKC    +C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CB610612 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSCYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTWACVNCTCG 290
            MSD CG+CDCAD+SQCVKKG+ Y    V+ + S     +  +V   E +G CKC    +C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CB610612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA5.579e-2266.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE1.857e-1764.62Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC2.426e-1757.81Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV8.627e-1555.38Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO8.627e-1556.06Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ3.278e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.278e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ5.234e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.989e-1145.45Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_C11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610612 ID=CB610612; Name=CB610612; organism=Citrus sinensis; type=EST; length=407bp
GGGGATATCATCACACCATAGCAAAGCAAGTTTCGTACAATAAAGAGCCC
TCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGGA
CACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGG
GAAGCTGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGC
ACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCAA
GTGCGGCCCCACCTGGGCTTGTGTGAACTGCACTTGTGGTAGTCACTAAT
AAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATAT
TGTGGGGGTTAAGAATAATGTAAGGGTGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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