CB610622

Overview
NameCB610622
Unique NameCB610622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2478 contig Csv1_Contig2478:45..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.713e-43
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+   VNPKAYPLAD+ L  T+LDLVQQAANYKQL+KGANEATKTLNRGI+EFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  E SQLK QIQ L+ +IE+LL+
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQQSIERLLV 128          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.713e-43
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+   VNPKAYPLAD+ L  T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ AIE+LL+
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQQAIERLLV 128          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.462e-43
Identity = 89/128 (69.53%), Postives = 101/128 (78.91%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+ + VNPKA+PLAD+NL   ++DLVQQA NYKQLKKGANEATKTLNRGISE IVMAAD              EDKNVPYVFV SK ALGRACGVTRPVIA S+T NE SQLK+QIQ++K+ +EKLLI
Sbjct:    1 MADDGVNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.837e-42
Identity = 90/124 (72.58%), Postives = 100/124 (80.65%), Query Frame = 3
Query:  102 AVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            +VNPKA+PLADS L   ILDLVQQA++YKQL+KGANEATKTLNRGISEFIVMAADT             EDKNVPYVFVPSK ALGRACGV+RPVI+ S+T+NEAS L  QIQ +K AIEKLLI
Sbjct:    2 SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 170.629 bits (431), Expect = 6.317e-42
Identity = 88/128 (68.75%), Postives = 100/128 (78.12%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+   VNPKAYPLAD++L   +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 170.629 bits (431), Expect = 6.317e-42
Identity = 88/128 (68.75%), Postives = 100/128 (78.12%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+   VNPKAYPLAD++L   +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.317e-42
Identity = 88/128 (68.75%), Postives = 100/128 (78.12%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+   VNPKAYPLAD++L   +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 6.317e-42
Identity = 88/128 (68.75%), Postives = 100/128 (78.12%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+   VNPKAYPLAD++L   +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 6.317e-42
Identity = 88/128 (68.75%), Postives = 100/128 (78.12%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+   VNPKAYPLAD++L   +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_CANAL (13 kDa ribonucleoprotein-associated protein OS=Candida albicans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.654e-40
Identity = 87/124 (70.16%), Postives = 96/124 (77.42%), Query Frame = 3
Query:  102 AVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            A NPKA+PLADS L   ILD+VQQ+ N +QLKKGANEATKTLNRGISEFI+MAADT             EDKNVPYVFVPSK ALGRACGV+RPVIA SVTSN+AS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVIAASVTSNDASSIKNQIYGIKDKIETLLI 126          
The following BLAST results are available for this feature:
BLAST of CB610622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
NH2L1_XENTR5.713e-4370.31NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_XENLA5.713e-4370.31NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
NH2L1_CAEEL7.462e-4369.53NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
SNU13_SCHPO4.837e-4272.5813 kDa ribonucleoprotein-associated protein OS=Sch... [more]
NH2L1_RAT6.317e-4268.75NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE6.317e-4268.75NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA6.317e-4268.75NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN6.317e-4268.75NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_BOVIN6.317e-4268.75NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_CANAL2.654e-4070.1613 kDa ribonucleoprotein-associated protein OS=Can... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610622 ID=CB610622; Name=CB610622; organism=Citrus sinensis; type=EST; length=662bp
GGGGCTCTTCTTTCGCTTAAACCCTGGGACCTTTGTACGCTTCATTAGCT
GCCGCAAAAACCCTAGCCTCCGTCCCCGCCACCACGAAAATGTCAGGAGA
AGCAGTGAACCCTAAAGCTTACCCGCTAGCAGATTCTAATCTCATAATCA
CGATACTGGATCTCGTTCAGCAAGCTGCCAATTACAAGCAGCTCAAAAAG
GGCGCCAATGAAGCTACTAAGACTCTTAACAGAGGTATCTCCGAGTTTAT
TGTGATGGCTGCTGATACCGAGCCTCTGGAGATTCTTCTTCATCTTCCAC
TGCTTGCAGAGGACAAGAATGTTCCCTATGTTTTTGTCCCTTCAAAGCAG
GCTCTTGGCAGGGCATGTGGGGTCACAAGACCTGTCATTGCTTGCTCTGT
GACCTCAAATGAGGCGAGTCAGTTGAAGACTCAAATTCAACAGCTGAAGG
ATGCCATTGAGAAGCTCTTGATATGAATATAATGGGATTCATATTCGGTG
TGATGGGCCTCTTTGATGGTGGTTAGAGGCTTTGACTGATGGTGTAGTTG
TGCTGCTTGGAAATCTTCTATTATTAATCTTTGTATTTTTGTCTTTTATG
TTTTCTTGTCATGCGATCTGGGAAAGCTTTTGGAATCATATTTACCAGAA
CCTGCAATGAAT
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