CB610623

Overview
NameCB610623
Unique NameCB610623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2750 contig Csv1_Contig2750:313..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.206e-27
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K  F YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   52 LKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.206e-27
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K  F YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   52 LKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.206e-27
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K  F YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   52 LKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.384e-27
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K  F Y+KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   52 LKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.439e-26
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K  + YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE+IK+HGF
Sbjct:   50 LKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.025e-24
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K  + Y+KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   50 LKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.339e-24
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K  + Y KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   50 LKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.643e-24
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K  + Y KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I++HGF
Sbjct:   50 LKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.030e-21
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 3
Query:    3 VKXXFIYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            +K    Y+KILKDLKK  CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:   50 LKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CB610623 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.136e-15
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 3
Query:   27 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 194
            K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   58 KLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CB610623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SPOST2.206e-2790.63Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ2.206e-2790.63Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI2.206e-2790.63Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE8.384e-2789.06Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_SALBA2.439e-2687.50Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI12_ARATH1.025e-2482.81Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH1.339e-2482.81Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL6.643e-2481.25Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR4.030e-2175.00Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG1.136e-1562.50Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610623 ID=CB610623; Name=CB610623; organism=Citrus sinensis; type=EST; length=538bp
GGGTGAAGAANNAATTTATTTACAACAAAATCCTCAAGGACCTCAAAAAG
GAATTTTGCTGCAATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGT
CATTCAACTCCAAGGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTC
AGGCTGGGATTGTGAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTA
AACAGCAACTTCCGTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCA
GTGCAGAACATGCTATTGATACTATTAAAAAAAAAAAAAATTTGTATGTG
GTGGTGCTGTTATATCATCTCCTGTGTTGGTTTAGTATTGTTTTATCTGT
TTTTGTGCCACTGATGTTTCCTAGTTCTCGGTTTTATGTAATGTGGGATG
ATTATGGTTATGTGATGCAGTATAGTTTGCTCGTATGTTGTAAGTACAAA
TTATTATCCAAAGTTATCATCTAATTTTAATGGGTACTAGAAGGAATAAT
TTGCTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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