CB610641

Overview
NameCB610641
Unique NameCB610641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig399 contig Csv1_Contig399:1..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.192e-19
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 1
Query:   28 TATCVDILIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAITK 183
            TA C+DILI +ILPPLGVFLKFGC  EFWICL L  LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.192e-19
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 1
Query:   28 TATCVDILIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAITK 183
            TA C+DILI +ILPPLGVFLKFGC  EFWICL L  LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.906e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   25 STATCVDILIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAITK 183
            STAT VDI+I ++LPPLGVFL+FGC  EFWICL L +LGYIPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.033e-17
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   25 STATCVDILIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAITK 183
            STATC+DI++ +ILPPLGVF KFGC  EFWICL L   GY+PGIIYAV+ ITK
Sbjct:    4 STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   25 STATCVDILIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAITK 183
            STAT V+I++ +ILPPLGVFLKFGCK EFWICL L + GY+PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.181e-13
Identity = 30/51 (58.82%), Postives = 43/51 (84.31%), Query Frame = 1
Query:   25 STATCVDILIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAI 177
            ++AT +++++ +ILPP+GVFL++G   EFWICL L +LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   13 MPYGSTATCVDILIXVILPPLGVFLKFGC-KAEFWICLFLAILGYIPGIIYAVYAI 177
            M  G   T ++IL+ +ILPPLGVFL+FGC   EF ICL L ILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   28 TATCVDILIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAI 177
            +AT +++++ +ILPP+GVFL++    EFWICL L ILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   28 TATCVDILIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAI 177
            +AT +++++ +ILPP+GVFL++    EFWICL L ILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of CB610641 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   34 TCVDI---LIXVILPPLGVFLKFGCKAEFWICLFLAILGYIPGIIYAVYAITK 183
            TC DI   +I +ILPPLGVFL+ GC + FWI + L ILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of CB610641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
LTI6B_ORYSJ4.192e-1980.77Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI4.192e-1980.77Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
RCI2A_ARATH7.906e-1873.58Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
LTI6A_ORYSJ1.033e-1771.70Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH1.349e-1771.70Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
LT02_HORVU1.181e-1358.82Low temperature-induced protein lt101.2 OS=Hordeum... [more]
OSR8_ORYSJ7.658e-1362.50Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT01_HORVU1.306e-1260.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL1.306e-1260.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA2.463e-1162.26Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]
back to top
Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_A06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610641 ID=CB610641; Name=CB610641; organism=Citrus sinensis; type=EST; length=562bp
GGGCAATCAAAGATGCCATATGGAAGCACAGCAACATGCGTAGATATTCT
GATCNCTGTTATCTTGCCTCCTCTTGGTGTCTTTCTCAAATTTGGTTGCA
AGGCTGAGTTTTGGATCTGTTTGTTCTTGGCAATTCTGGGGTATATCCCT
GGAATTATTTATGCTGTTTATGCCATCACCAAGAAGTGATCTCTCTTCTT
CATCTATTGAGAGATCCCAAGGGCATCATGTGTTTATGAGATCTTTTATT
TACAACCGTTTGATGGACAGCTCTGATTTGATGTGGCCAGATGGGTTCTG
ATTCTTAATCAACTGGGGTGTGCGTGTGTGTGGGAGAGAGCACTTGTTTC
GTTTGTTAATCTTTGTCGTTTTGTTTTCTTTAATTTGTCCTTTTTAATGA
ATTTTAATTCAATATGTTGATGTAAAGTGGAGTATTATTGAGTGTGTAAA
TTGCCTTGTGAGTCATTACAAGTCCCCACAAAACTAAATTTGTTCTGAAT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
back to top