CB610644

Overview
NameCB610644
Unique NameCB610644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:1104..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.816e-24
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    5 STTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            +TTV RALA YG+ A  EM++N MAQDLSWKGPAK WE+ LL+L V+GSEPG+DGEEIAPLAKENVATP
Sbjct:  540 ATTVERALAAYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSEPGVDGEEIAPLAKENVATP 608          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.879e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 2
Query:    8 TTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            TTV RALA YGT A  EM+KN M+Q+LSWKGPAK WE  LL+L VAGSEPG++G+EIAPLAKENVATP
Sbjct:  541 TTVGRALAMYGTLAFTEMIKNCMSQELSWKGPAKNWETVLLSLGVAGSEPGVEGDEIAPLAKENVATP 608          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.925e-22
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 2
Query:    8 TTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            TTV RALA YGT A AEM+KN M+++LSWK PAKKWE  LL L  +GSEPG++GEEIAPLAKENVATP
Sbjct:  540 TTVARALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP 607          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 2
Query:   11 TVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            TV RAL TY T AL EM+ N MAQDLSWKGPA+ WE+ LL+LEV GSEPG +GEEIAPLAKENV TP
Sbjct:  542 TVARALGTYATAALREMILNCMAQDLSWKGPARMWEKMLLDLEVTGSEPGTEGEEIAPLAKENVPTP 608          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.128e-21
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    5 STTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            +TT++RA+   GT A  EM+KN M QDLSWKGPAK WE  LL+L VAG EPGI+GEEIAPLAKENVA P
Sbjct:  540 ATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKENVAAP 608          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.193e-21
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    5 STTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            +TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGSEPG++GEEIAPLAKENVA P
Sbjct:  538 ATTLKRAIKIVGTPAYNEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSEPGVEGEEIAPLAKENVAAP 606          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.088e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    5 STTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            + TV+RAL TYGTQA+ +++ N MAQ+ SWK PAK WE+ LLNLEV G+  GIDG+EIAPLAKENVATP
Sbjct:  535 AATVKRALKTYGTQAMKQIILNCMAQNFSWKKPAKLWEKALLNLEVTGNVAGIDGDEIAPLAKENVATP 603          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.088e-21
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    5 STTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            +TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL+L VAG EPG++GEEIAPLAKENVA P
Sbjct:  537 ATTLQRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGVEGEEIAPLAKENVAAP 605          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.056e-20
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 2
Query:   14 VRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            V RA+A YGT A+ EM+KN M QD SWKGPA+ WE+ LL+L VAGSE G +GEEIAPLAKENVATP
Sbjct:  545 VTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP 610          
BLAST of CB610644 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.073e-20
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 2
Query:    8 TTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 211
            + V RAL  Y T     M++N MAQDLSWKGPAKKWEE LL+L V GS+PGI+GEEIAPLAK+NVATP
Sbjct:  498 SNVTRALKQYRTPVFHAMVQNCMAQDLSWKGPAKKWEEALLSLGVEGSQPGIEGEEIAPLAKQNVATP 565          
The following BLAST results are available for this feature:
BLAST of CB610644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_ANTMA7.816e-2475.36Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA3.879e-2375.00Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU1.925e-2273.53Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES5.601e-2274.63Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI2.128e-2169.57Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA6.193e-2168.12Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA8.088e-2168.12Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE8.088e-2166.67Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH1.056e-2071.21Probable granule-bound starch synthase 1, chloropl... [more]
SSG1B_HORVU3.073e-2069.12Granule-bound starch synthase 1b, chloroplastic/am... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_A11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610644 ID=CB610644; Name=CB610644; organism=Citrus sinensis; type=EST; length=404bp
GGGGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGCTT
TGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGA
CCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAG
TGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATG
TGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACC
GCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAAAT
AACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTG
GAGTTGAGACATTAGTGTTTACCTTGAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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