CB610690

Overview
NameCB610690
Unique NameCB610690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610690_ssr622 microsatellite CB610690_ssr622:622..637. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:251..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 8.548e-56
Identity = 105/158 (66.46%), Postives = 123/158 (77.85%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSL+PS FGGRRTNVFDPFSLDVWDPF GFL+  LTNAP  A+D + F NA++DW+ETP+AHVFKAD+PGL+          G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT            +++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.451e-55
Identity = 108/160 (67.50%), Postives = 124/160 (77.50%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFL--SSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSLIPSIFGGRR+NVFDPFS D+WDPF GF   SSAL NA S+ARD + F NAR+DWKETP+AHVFKADLPGL+            +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV             +I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 9.451e-55
Identity = 109/159 (68.55%), Postives = 123/159 (77.36%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFLS-SALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSLIPSIFGGRRTNVFDPFSLDV+DPF GFL+ S L NAP  A D + F NA++DW+ETP+AHVFKADLPGLR          G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT            +I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.361e-52
Identity = 101/158 (63.92%), Postives = 119/158 (75.32%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MS+IPS FGGRR+NVFDPFSLDVWDPF  F     ++A    ++T+ F N  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT            AI+ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 104/163 (63.80%), Postives = 120/163 (73.62%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGF-----LSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSLIP+ FGGRR NVFDPFSLDVWDPF  F     LSSA  + P  +R+ S F + R+DWKETP+AHVFKAD+PGL+           ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.081e-50
Identity = 102/158 (64.56%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSLIPSIFGGRR+NVFDPFSLDVWDPF  F      +A +SA     F N R+DWKETP+AHVF+AD+PGL+           R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSA-----FVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.844e-50
Identity = 97/158 (61.39%), Postives = 117/158 (74.05%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSLIPS FGGRR+NVFDPFSLDVWDPF  F  +    + S  R+ S F + R+DWKETP+AHVFKADLPG++           R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT             I+ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.146e-50
Identity = 99/158 (62.66%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSLIPS F GRR+NVFDPFSLDVWDP   F  S  + + S  R+   F + R+DWKETP+AHVFKADLPGL+           R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT            +IEISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 99/158 (62.66%), Postives = 117/158 (74.05%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSLIPS FGGRR++VFDPFSLDVWDPF  F   +  +A +SA     F + R+DWKETP+AHVFKAD+PGL+          GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT            AI+ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSAENSA-----FVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.322e-48
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFGGFLSSALTNAPSSA--RDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            MSLIP  FGGRR+NVFDPFSLD+WDPF  F      + P+S+   + S F + R+DWKETP+AHVFKAD+PGL+           R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT            AIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
The following BLAST results are available for this feature:
BLAST of CB610690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HSP17_ARATH8.548e-5666.4617.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ARATH9.451e-5567.5018.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH9.451e-5568.5517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA3.361e-5263.9217.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN1.668e-5163.8018.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN1.081e-5064.5617.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.844e-5061.3918.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_PEA3.146e-5062.6618.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN1.561e-4962.6617.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN1.322e-4861.2517.5 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_D10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610690 ID=CB610690; Name=CB610690; organism=Citrus sinensis; type=EST; length=697bp
GGGATCTTCGATTTGATTGATCAAAACACTTCTGAAGTTGTTGAGCATTT
AATTAGCGCTCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGGT
GGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCC
TTTCGGCGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCTA
GGGATACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCCT
CAGGCTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGT
GAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGGA
GCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGC
AGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGA
GCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCTA
AACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAA
GTGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATAAAT
TTGGTACGAAAGCAAAGCCCTTGTGTGTGTGTGTGTGTTTGCAAGAGCTT
CCCTTCCCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGTTTGCA
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