CB610808

Overview
NameCB610808
Unique NameCB610808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 8.659e-56
Identity = 110/121 (90.91%), Postives = 116/121 (95.87%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAE+VNNRGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.519e-55
Identity = 109/121 (90.08%), Postives = 116/121 (95.87%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP++SVELYAE+V NRGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.519e-55
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAE+VNNRGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.765e-51
Identity = 104/121 (85.95%), Postives = 108/121 (89.26%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.765e-51
Identity = 104/121 (85.95%), Postives = 108/121 (89.26%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.765e-51
Identity = 104/121 (85.95%), Postives = 108/121 (89.26%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 3.765e-51
Identity = 104/121 (85.95%), Postives = 108/121 (89.26%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.765e-51
Identity = 104/121 (85.95%), Postives = 108/121 (89.26%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.765e-51
Identity = 104/121 (85.95%), Postives = 108/121 (89.26%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121
[Close]
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 3.765e-51
Identity = 104/121 (85.95%), Postives = 108/121 (89.26%), Query Frame = 2 
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121
The following BLAST results are available for this feature:
BLAST of CB610808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS31_ARATH8.659e-5690.9140S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS33_ARATH2.519e-5590.0840S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS32_ARATH2.519e-5590.0840S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS3_RAT3.765e-5185.9540S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_PIG3.765e-5185.9540S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_MOUSE3.765e-5185.9540S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS3_HUMAN3.765e-5185.9540S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN3.765e-5185.9540S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_AMBME3.765e-5185.9540S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]
RS31_XENLA3.765e-5185.9540S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610808 ID=CB610808; Name=CB610808; organism=Citrus sinensis; type=EST; length=484bp
GGGGATACTGGGATATAAGCAGGCGAGTATATATTATCGCAAACATTAGG
GTTTACGGACTAGAGAGTGAGAGACTCCCAAAGCGGCGAAGCAGCAGCGG
TGTTGGATTCTGAGAAACATGGCTACTCAGATTAGCAAGAAGCGGAAATT
TGTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAG
AGCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTG
CGCACTGAGATCATCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGA
GAAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCA
AGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGAGAGTTAACAATAGG
GGTCTCTGTGCCATGATCNAGGCTGAGTCTCTGCTTTACAAGCTTCTTGG
AGGTCTCGCTGGTCGAAGGGCATGCTATGGTGGG
back to top