CB610809

Overview
NameCB610809
Unique NameCB610809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610809_ssr362 microsatellite CB610809_ssr362:362..373. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB610809 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 35/53 (66.04%), Postives = 36/53 (67.92%), Query Frame = 2
Query:   47 GTATCXXXXXXXXXXXXGVFLKFGCRVEFWICLLLTIFGYIPGIIYAVYAITK 205
            GTA C            GVFLKFGC  EFWICLLLT  GYIPGIIYA+YAITK
Sbjct:    3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CB610809 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 35/53 (66.04%), Postives = 36/53 (67.92%), Query Frame = 2
Query:   47 GTATCXXXXXXXXXXXXGVFLKFGCRVEFWICLLLTIFGYIPGIIYAVYAITK 205
            GTA C            GVFLKFGC  EFWICLLLT  GYIPGIIYA+YAITK
Sbjct:    3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CB610809 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = 2
Query:   35 MADEGTATCXXXXXXXXXXXXGVFLKFGCRVEFWICLLLTIFGYIPGIIYAVYAITK 205
            MAD  TATC            GVF KFGC +EFWICLLLT FGY+PGIIYAV+ ITK
Sbjct:    1 MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of CB610809 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.728e-12
Identity = 29/36 (80.56%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   98 GVFLKFGCRVEFWICLLLTIFGYIPGIIYAVYAITK 205
            GVFLKFGC+VEFWICL+LT+FGY+PGI+YA+Y ITK
Sbjct:   19 GVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of CB610809 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 2
Query:   98 GVFLKFGCRVEFWICLLLTIFGYIPGIIYAVYAITK 205
            GVFL+FGC VEFWICL+LT+ GYIPGIIYA+Y +TK
Sbjct:   19 GVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
The following BLAST results are available for this feature:
BLAST of CB610809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LTI6B_ORYSJ3.482e-1366.04Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI3.482e-1366.04Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ3.482e-1363.16Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH1.728e-1280.56Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH1.911e-1177.78Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_E04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610809 ID=CB610809; Name=CB610809; organism=Citrus sinensis; type=EST; length=566bp
TTTTTTTTTTTTTTTTTGTAAGAATCAATCAAAGATGGCAGATGAAGGCA
CAGCAACATGCATTGATATTATCTTGGCTATCATTTTGCCTCCTCTCGGT
GTCTTTCTCAAATTTGGCTGCAGGGTTGAGTTTTGGATCTGTTTGCTGTT
GACAATTTTCGGGTATATCCCTGGAATTATTTATGCTGTTTATGCCATCA
CCAAGAATTGATCTCTCTCTTCTTATTCTATGGAGAGATCTGAGGGGCAG
TATGTGTTTATGAGATTTTTATTTACAACCATTTGATGGACAGTTCTGAT
TTGATGTAGCCAGATGGATTATGATTCTTCTTTTAAGTGTTGTGTGTGCG
CGTGTGTGAGAGAGTGAGTGAGTGAAGTGTTCCTTTGTTGATCTTTAATT
TTTTCCGCCCTTTTTGTATGATTTGTCCCTTTTATGAACTTTAGTTCATT
ATTTTAATGTAAATTCCGCGACAGAAAATTTTTCTTGGGCTAAAAATTTT
ATATATCTATATATCTGTCACTAATTCAGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACATGG
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