CB610952

Overview
NameCB610952
Unique NameCB610952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB610952 vs. ExPASy Swiss-Prot
Match: FDL1_ARATH (F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 7.404e-38
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = 2 
Query:    5 KLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITPCTFVTERKVNMLIELVR 439
            KLVGYIYFTKYLSIGDDPGRLP+TY HLK IELYQV FED  E+LV++RL+T+SPNLKEL +S S      +E    D +E++ + D     L+ VK+TD SG+ +E+E I+FLL  SPVLE ++++      + K++M+IEL+R
Sbjct:  258 KLVGYIYFTKYLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGFDLFERD-YFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLR 401
The following BLAST results are available for this feature:
BLAST of CB610952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FDL1_ARATH7.404e-3854.48F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_B09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610952 ID=CB610952; Name=CB610952; organism=Citrus sinensis; type=EST; length=467bp
GGGGAAACTTGTCGGCTATATATACTTCACCAAGTATTTGAGTATAGGTG
ATGATCCGGGAAGACTTCCGATTACATATAATCATCTAAAAGTGATTGAA
CTTTATCAAGTGAGTTTTGAAGATATGAAAGAGATACTCGTTGTTATTCG
ATTGATTACGAACTCTCCTAATCTGAAGGAACTTCATATTTCAGGTTCCT
CAAATACATTAGCTGCTATAGAAGCACCTGATTTGGATTTTTGGGAAAAA
GAATGCCATGCAGATTGCTCGTTTAAACAACTGAAACTTGTGAAGATGAC
AGATATATCTGGTGTACCCCACGAGATGGAGCTAATCAAATTTTTGCTTA
GTAATTCTCCAGTGCTTGAGATAATGAGTATCACCCCTTGCACATTTGTT
ACAGAGAGAAAAGTGAATATGTTGATTGAGTTAGTGAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
back to top