CB610954

Overview
NameCB610954
Unique NameCB610954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6248 contig Csv1_Contig6248:20..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_ARATH (NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3)

HSP 1 Score: 365.54 bits (937), Expect = 2.106e-102
Identity = 176/207 (85.02%), Postives = 191/207 (92.27%), Query Frame = 1
Query:   67 EIRPAIR-PSLQASRSFSTALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGGK 684
            EIR   R P+ Q +RS STALNYHLDSPDN PDLPW+FS+ N+ KVKEILS+YPSNYKQSAVIPLLDLAQQQ+GGWLPVSAMN VAK+IEVAPIRVYEVATFYSMFNR+KVGKYHLLVCGTTPCM+RGSR+IE ALL HLGVKR EVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNY+EDVTP++VVEIVE LR+G K
Sbjct:   12 EIRQVFRQPTSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEK 218          

HSP 2 Score: 28.1054 bits (61), Expect = 2.106e-102
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  677 GEKLPPGTQNPKRI 718
            GEK P GTQNPKRI
Sbjct:  216 GEKPPHGTQNPKRI 229          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_CAEEL (Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Caenorhabditis elegans GN=F53F4.10 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.180e-53
Identity = 103/196 (52.55%), Postives = 138/196 (70.41%), Query Frame = 1
Query:  106 RSFSTALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRGGKATA 693
            R  +T L  H D+ +NN ++ +KF+  N+E++K I+  YP  +K  A+IPLLDLAQ+QHG WLP+SAM+EVAKI+EV  +R YEVATFY+MFNR  VGKY L VC TTPCM+RG+  I + + K LG+   E TKDGLF++ E+EC+G CVNAPMI + D          +Y+ED+TPK V EI++ L+ G K  A
Sbjct:   21 RGGATGLMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPMIQIND----------DYFEDLTPKDVNEILDDLKAGRKPAA 205          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_BOVIN (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Bos taurus GN=NDUFV2 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 9.253e-53
Identity = 97/186 (52.15%), Postives = 138/186 (74.19%), Query Frame = 1
Query:  121 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRG 678
            AL  H D+P+NNP+ P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA+I++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+TPK + EI++ L+ G
Sbjct:   37 ALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIIDELKAG 211          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_RAT (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Rattus norvegicus GN=Ndufv2 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 96/186 (51.61%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  121 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRG 678
            AL  H D+P+NNPD P+ F+  N E+++ I+ +YP  ++ +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I + L + LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED+TPK + EI++ LR G
Sbjct:   36 ALFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------DYYEDLTPKDIEEIIDELRAG 210          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_PONPY (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pongo pygmaeus GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 96/186 (51.61%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  121 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRG 678
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+T K + EI++ L+ G
Sbjct:   37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAG 211          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_PANTR (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pan troglodytes GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 96/186 (51.61%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  121 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRG 678
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+T K + EI++ L+ G
Sbjct:   37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAG 211          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_HUMAN (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 96/186 (51.61%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  121 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRG 678
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+T K + EI++ L+ G
Sbjct:   37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAG 211          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_GORGO (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 96/186 (51.61%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  121 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRG 678
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  +K +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+T K + EI++ L+ G
Sbjct:   37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAG 211          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_MOUSE (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Mus musculus GN=Ndufv2 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.998e-52
Identity = 95/186 (51.08%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  121 ALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRG 678
            AL  H D+P+NNPD P+ F+  N ++++ I+ +YP  ++ +AV+P+LDLAQ+Q+G WLP+SAMN+VA++++V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I + L + LG+K  E T D LF++ E+EC+G CVNAPM+ + D          NYYED+TPK + EI++ L+ G
Sbjct:   36 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIIDELKAG 210          
BLAST of CB610954 vs. ExPASy Swiss-Prot
Match: NDUV2_NEUCR (NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-24 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.383e-48
Identity = 95/204 (46.57%), Postives = 140/204 (68.63%), Query Frame = 1
Query:   70 IRPAIRPSLQAS-RSFSTALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVR--GSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLR 672
            I P  R  L  S R  S  L  H ++PDNNPD+P+KFS  N++ ++EI+  YP  YK++AV+PLLDL Q+QHG +  +S MNEVA+++E+ P+RVYEVA+FY+M+NR+ VGK+H+  C TTPC +   GS  I  A+ +HLG+K+ E T DGLF+  E+EC+G C NAPM+ + D          +Y+ED+TP+ + +++  L+
Sbjct:   27 IAPVSRACLSISARRPSDTLMVHRNTPDNNPDIPFKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHG-FCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVGKFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLFTFIEVECLGACANAPMVQIND----------DYFEDLTPETIKQVLSALK 219          
The following BLAST results are available for this feature:
BLAST of CB610954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
NDUV2_ARATH2.106e-10285.02NADH-ubiquinone oxidoreductase 24 kDa subunit, mit... [more]
NDUV2_CAEEL3.180e-5352.55Probable NADH dehydrogenase [ubiquinone] flavoprot... [more]
NDUV2_BOVIN9.253e-5352.15NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_RAT3.516e-5251.61NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_PONPY3.516e-5251.61NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_PANTR3.516e-5251.61NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_HUMAN3.516e-5251.61NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_GORGO3.516e-5251.61NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_MOUSE5.998e-5251.08NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_NEUCR1.383e-4846.57NADH-ubiquinone oxidoreductase 24 kDa subunit, mit... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_C01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610954 ID=CB610954; Name=CB610954; organism=Citrus sinensis; type=EST; length=718bp
GGGGACTCTTGTTGAGCTTAGAACTCGTCGAAAATGCTAGCTCGTCTCGC
GGCCAAGCGTCTTCTCGAGATTCGTCCAGCAATCCGTCCATCTCTTCAGG
CATCTCGATCTTTCTCCACTGCCTTGAACTATCATCTTGATTCTCCAGAT
AACAATCCGGACCTTCCGTGGAAGTTCTCTGATACAAACAAAGAAAAGGT
TAAGGAGATATTGTCTCACTATCCATCCAATTACAAGCAATCTGCAGTCA
TTCCACTGCTAGATCTTGCACAGCAGCAGCATGGAGGGTGGCTTCCTGTT
TCAGCAATGAATGAGGTAGCTAAAATTATAGAGGTTGCTCCCATCCGTGT
ATATGAGGTCGCGACATTTTATTCAATGTTCAACAGATCAAAGGTAGGCA
AATACCACCTACTGGTCTGTGGCACAACACCTTGTATGGTACGTGGTTCA
CGAGAAATTGAAGATGCCTTACTGAAACACTTAGGCGTGAAGCGCAATGA
AGTAACTAAGGATGGCTTGTTCTCTGTTGGAGAAATGGAATGCATGGGAT
GCTGTGTAAACGCTCCTATGATTACAGTGGCTGATTACTCCAATGGATCT
GAAGGATATACTTACAATTATTATGAAGATGTCACTCCGAAACGAGTTGT
TGAGATAGTTGAAATGTTAAGGAGGGGGGGAAAAGCTACCGCCCGGCACG
CAAAATCCAAAGCGCATT
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